| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1525 |
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| Symbol | |
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| ID | 4922748 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 1748698 |
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| End bp | 1749132 |
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| Gene Length | 435 bp |
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| Protein Length | 144 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 640163080 |
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| Product | biopolymer transport protein ExbD/TolR |
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| Protein accession | YP_001093651 |
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| Protein GI | 127512454 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0848] Biopolymer transport protein |
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| TIGRFAM ID | [TIGR02801] TolR protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.0168753 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.844163 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCAGCAGG GTTATCAACG CAAGAGGCGT CGTCCGGTTG CCGAGATCAA CGTTGTCCCT
TATATCGACG TGATGTTGGT ACTGCTCATC ATCTTCATGG TGACCGCGCC TATCGTGACC
CAGGGGGTAA AGGTGGATCT GCCCCAAGGG GAGGCCGAAA GCCTGCCTGC CGACAGTAAG
CCGCCCGTGG TGGCCTCTAT CGATGCCGAC GGCGATTATT ACCTGGATAT TGGCAGCGCC
AGCAGCAAAG AGGTGTTGGA TCTCGAAGAG ATCGCGGTCA GAGTCAGCGC CATAGTGCAG
CTGGAGCCTG AGCGTCCTGT GGTGGTTAAG GCCGACAGAA GCATTCCCTA TGAGCGGGTG
ATCCAGTTGA TGGTGACGTT ACAAAAAGCA GGCGTACCTT CGGTAGGCCT GATGACAGAT
TCGCCTGAGG AGTAG
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| Protein sequence | MQQGYQRKRR RPVAEINVVP YIDVMLVLLI IFMVTAPIVT QGVKVDLPQG EAESLPADSK
PPVVASIDAD GDYYLDIGSA SSKEVLDLEE IAVRVSAIVQ LEPERPVVVK ADRSIPYERV
IQLMVTLQKA GVPSVGLMTD SPEE
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