| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1524 |
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| Symbol | |
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| ID | 4924141 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 1748009 |
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| End bp | 1748698 |
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| Gene Length | 690 bp |
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| Protein Length | 229 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 640163079 |
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| Product | MotA/TolQ/ExbB proton channel |
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| Protein accession | YP_001093650 |
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| Protein GI | 127512453 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0811] Biopolymer transport proteins |
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| TIGRFAM ID | [TIGR02796] TolQ protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0123133 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.884869 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | GTGGAAGCTG ATATCTCTTT TATCGGGCTG TTTTTACAGG CCAGTCTATT AGTTAAATTC
GTCATGTTGA CGCTACTGGC ATTGTCCGTG GTGTCCTGGG CGGTGATTAT TCAACGTAGA
CGCCTGCTGA CCTCGGCTCG TCAGCGTTCG CTCAAATTCG AAGACAAGTT TTGGTCCGGT
GTCGATCTCA ATAAGCTCTA TAAGGAACTC TCTGCCAGAC AAGAGAGCAA TACCGGTTTA
GAGGCGATGT TTTACGCCGG CTTTAAAGAG TATGCCCGCC TGAGTAACCT TAACGGCAAG
GTGCCTGCCG CCGTGATGGA CGGCTGTTAT CGCGCCATGC GCGTCTCGCT CTCCAGAGAA
CTTGAGAAGC TGGAAACCCA TCTGCCATTG CTGGCAACGA TTGGCTCGAC CAGCCCTTAT
ATCGGTCTGT TTGGTACCGT GTGGGGGATC ATGAATTCCT TCATCGCGTT GGGCGCGGTT
GAAAACGCGA CACTTGCCAT GGTGGCCCCG GGTATCGCCG AGGCACTTAT CGCTACGGCC
ATGGGCCTGT TTGCGGCGAT CCCTGCGGTA ATCGCCTACA ACCGCTTCTC GACTCAGGTG
GAGAAGATAG AGATGTCATA CGCCAACTTC ATGGAAGAGT TCTCTAGCAT CCTGCATCGT
CAGGCCTACA GTGAGAAGGA AGTCGGCTAA
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| Protein sequence | MEADISFIGL FLQASLLVKF VMLTLLALSV VSWAVIIQRR RLLTSARQRS LKFEDKFWSG
VDLNKLYKEL SARQESNTGL EAMFYAGFKE YARLSNLNGK VPAAVMDGCY RAMRVSLSRE
LEKLETHLPL LATIGSTSPY IGLFGTVWGI MNSFIALGAV ENATLAMVAP GIAEALIATA
MGLFAAIPAV IAYNRFSTQV EKIEMSYANF MEEFSSILHR QAYSEKEVG
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