| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1516 |
|---|
| Symbol | |
|---|
| ID | 4921711 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 1739339 |
|---|
| End bp | 1739944 |
|---|
| Gene Length | 606 bp |
|---|
| Protein Length | 201 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 640163071 |
|---|
| Product | alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen |
|---|
| Protein accession | YP_001093642 |
|---|
| Protein GI | 127512445 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0450] Peroxiredoxin |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.0000000137453 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.888378 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGTAT TAGTAGGCCG TCCGGCTCCT GATTTTACAG CTGCAGCAGT GCTAGGTAAT
GGCGAAATCG TTGATAGCTT TACCCTAAGC GAAGCGATTA AAGGAAAGCC AGCTGTAGTA
TTCTTCTACC CACTTGATTT CACATTCGTA TGCCCATCTG AGTTGATTGC TTTCGACCAC
CGCATGGAAG AGTTCAAGAA GCGTGGCGTA GAAGTTATCG GTGTTTCTAT CGATTCCCAG
TTCACTCACA ACGCATGGCG TAACACCCCA GTAGACAAGG GTGGTATCGG CCAGGTGCAA
TACACGCTAG TGGCTGACGT GAAGCACGAT ATCTGTAAAG CCTACGATGT TGAGCATCCA
GAAGCCGGTG TGGCTTTCCG TGGTTCTTTC CTGATCGACA AAGAAGGTCA GGTTCGTCAC
CAAGTTGTTA ACGATCTGCC ACTAGGCCGT AACGTTGACG AGATGCTACG TATGATCGAC
GCGCTTCAGT TCCACGAAGA GCACGGTGAC GTTTGCCCAG CTGGTTGGGA AAAAGGTGAC
AAGGGTATGG ACGCAAGCCC AGAAGGCGTT GCTTCTTACC TGACTGACAA CGCTGACTCA
CTATAA
|
|---|
| Protein sequence | MSVLVGRPAP DFTAAAVLGN GEIVDSFTLS EAIKGKPAVV FFYPLDFTFV CPSELIAFDH
RMEEFKKRGV EVIGVSIDSQ FTHNAWRNTP VDKGGIGQVQ YTLVADVKHD ICKAYDVEHP
EAGVAFRGSF LIDKEGQVRH QVVNDLPLGR NVDEMLRMID ALQFHEEHGD VCPAGWEKGD
KGMDASPEGV ASYLTDNADS L
|
|---|
| |