| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1514 |
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| Symbol | upp |
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| ID | 4922520 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 1736985 |
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| End bp | 1737611 |
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| Gene Length | 627 bp |
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| Protein Length | 208 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640163069 |
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| Product | uracil phosphoribosyltransferase |
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| Protein accession | YP_001093640 |
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| Protein GI | 127512443 |
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| COG category | [F] Nucleotide transport and metabolism |
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| COG ID | [COG0035] Uracil phosphoribosyltransferase |
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| TIGRFAM ID | [TIGR01091] uracil phosphoribosyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.000447278 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.454317 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAAAGTGG TCGAAGTTAA GCATCCTCTG GTACGTCATA AGATTGGCTT GATGCGTGAA
GGAGATATTA GTACTAAGCG TTTCCGTGAG TTAGCGGCTG AAGTGGGTAG CCTGTTGACC
TATGAAGCGA CCGCTGACTT TGAAACCGAG AAGGTCACTA TCGAAGGATG GAACGGTCCA
GTAGAAGTTG AGCAGATCAA GGGTAAGAAG GTTACCGTAG TGCCTATTCT GCGTGCCGGT
CTTGGCATGA TGGATGGCGT ACTTGAGCAC GTCCCGAGTG CACGTATCTC TGTTGTGGGT
ATCTATCGCG ACGAAGAGAC GCTGGAACCT GTGCCTTACT TTGAGAAGCT TGCCAGCAAT
ATGCATGAAC GTATCGCATT GGTGGTCGAC CCTATGTTGG CAACCGGCGG CTCTATGATC
TCAACTATCG ATCTGCTTAA AGAGCGTGGC TGCACCTCAA TCAAGGCGTT GGTATTAGTC
GCGGCGCCAG AAGGCATCGC GGCGCTTGAG AAGGCCCACC CAGATATCGA GCTTTACACC
GCTTCTATCG ACAAGTGCCT TAACGAGAAC GGTTACATCC TGCCTGGTCT GGGTGATGCT
GGCGATAAGA TCTTCGGGAC TAAGTAA
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| Protein sequence | MKVVEVKHPL VRHKIGLMRE GDISTKRFRE LAAEVGSLLT YEATADFETE KVTIEGWNGP
VEVEQIKGKK VTVVPILRAG LGMMDGVLEH VPSARISVVG IYRDEETLEP VPYFEKLASN
MHERIALVVD PMLATGGSMI STIDLLKERG CTSIKALVLV AAPEGIAALE KAHPDIELYT
ASIDKCLNEN GYILPGLGDA GDKIFGTK
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