| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1476 |
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| Symbol | |
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| ID | 4923475 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 1701706 |
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| End bp | 1702344 |
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| Gene Length | 639 bp |
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| Protein Length | 212 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 640163031 |
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| Product | RNA polymerase sigma factor |
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| Protein accession | YP_001093602 |
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| Protein GI | 127512405 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.135686 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.625888 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAGACAT TTGTTAGCGC AGGCGCCCCG GATAAAGGGA GTGCGAATAT CAAGACTCAA
CCAGAGACGC AGGTGCCTGC CGAGCTGTCG ACCTGGCTGG TGCGGGTAGC TGATGCAAGG
GACAAGCAGG CGTTTACCCG TCTGTTTCAA TTCTTTGCGC CCAAGATCAA ACGCTTTGGT
ATCAAGCAGT TAGGCAACGA GGCTCAGGCA CACGAGTTGG TGCAGGAGAC CATGAGTAAC
GTCTGGCGCA AGGCGCATCT TTATGACGGC GACAAAGGCG CGGCCACCAC TTGGGTCTAT
ACCGTGATGC GCAACGCCGC CTTCGATATG CTTAGGCGCG TCAAGGCCAA GGCCGAGATG
AACCTGGGTG ACGATATCTG GCCATTGGAA CAGGCGCAGG TCCAGAGTGA GGAGGAGCCG
CTACATTTTG CCGATCATCT GATGGAGAAG CAGATGCTGG CCTATGTCGA CAGCCTGCCC
GAGGCCCAGC GAGCCGTGGT CAAGGGCGTC TACTATCAGG AGCTCTCCCA GGAGCAGTTG
GCCCAGCAAT TTGGCGTGCC AATCGGCACC ATTAAATCCA GACTCAGACT TGCCCTGGCA
AAACTCAAGC AGCAGATGGG AGACCAGCAG CATGATTAA
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| Protein sequence | MQTFVSAGAP DKGSANIKTQ PETQVPAELS TWLVRVADAR DKQAFTRLFQ FFAPKIKRFG
IKQLGNEAQA HELVQETMSN VWRKAHLYDG DKGAATTWVY TVMRNAAFDM LRRVKAKAEM
NLGDDIWPLE QAQVQSEEEP LHFADHLMEK QMLAYVDSLP EAQRAVVKGV YYQELSQEQL
AQQFGVPIGT IKSRLRLALA KLKQQMGDQQ HD
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