| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1460 |
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| Symbol | |
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| ID | 4922837 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 1682576 |
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| End bp | 1683229 |
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| Gene Length | 654 bp |
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| Protein Length | 217 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 640163014 |
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| Product | pseudouridine synthase |
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| Protein accession | YP_001093586 |
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| Protein GI | 127512389 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAATTT TTAGTTACCA GCCCCCGGCT ATTCCCTGGC TCGACATACG CTACCAAGAT
CGCGACATTA TCATAATCAA CAAGCCATCT GGCCTGTTGT CTAATCCCGG CCGCGCCGCG
GAGACCCATG ACTGCGCCAT CAACCGCCTG TTGCAGCGTT TTCCCGAAGC GATCCTGGTG
CACAGGCTCG ACTGCGCCAC CTCTGGCATC ATGGTATTCG CCCTCAACAA GAAGGCCGAG
TCTCACCTCA AGACCCAGTT TCAAAACCGC ACCACAGAAA AATATTATGT GGCCGAGGTC
GAGGGCCTGA TGGCCCAGGA CAGTGGCAAG ATAGAGTTGG CGATGAAGCC TGATAGCGAG
CAACCGCCGC TACAGAAGAT TGCCGAGGAT GGCAAACCGG CGACCACCTA TTTTGAGGTG
CTGGAGCGAC GCAGCAACAG CACTCTGGTG AAACTCAAGC CGATCACGGG GCGAACCCAC
CAGCTCAGGT TACACATGAA GGCGCTGGGC CACACCATAC TGGGTGATGA TTTCTATGGC
GACGAAGCCA TTATTGCCGC CGCGCCGCGT CTGCACCTGC ATGCCGAGCA CTTGAGCATC
ACTCATCCCT ACAAGCAGAC CAGACTGAGC TTCTCGAGTC TGCATCCCTT CTAA
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| Protein sequence | MKIFSYQPPA IPWLDIRYQD RDIIIINKPS GLLSNPGRAA ETHDCAINRL LQRFPEAILV
HRLDCATSGI MVFALNKKAE SHLKTQFQNR TTEKYYVAEV EGLMAQDSGK IELAMKPDSE
QPPLQKIAED GKPATTYFEV LERRSNSTLV KLKPITGRTH QLRLHMKALG HTILGDDFYG
DEAIIAAAPR LHLHAEHLSI THPYKQTRLS FSSLHPF
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