| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1452 |
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| Symbol | |
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| ID | 4922901 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 1673444 |
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| End bp | 1674955 |
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| Gene Length | 1512 bp |
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| Protein Length | 503 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 640163006 |
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| Product | AraC family transcriptional regulator |
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| Protein accession | YP_001093578 |
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| Protein GI | 127512381 |
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| COG category | [F] Nucleotide transport and metabolism
[L] Replication, recombination and repair |
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| COG ID | [COG0122] 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase
[COG2169] Adenosine deaminase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAGGCTG AGGCGCAGCA TCCCAAGGCG GAGCAGTATC GCACCGCGCG TCTGTCACGG
GACGCCAGAT TCGATGGCCT GTTCTTCGTC GGCGTCTTCT CCACCGGCAT CTTTTGTCGT
CCTATCTGCC CGGCGGTGCC TGCCAAGGAG GCCAATGTGA GGTATTTCGA CGATGCCCTG
TCGGCGGCTC AGGCTGGCCT GAGGCCCTGT CTGCGTTGTC GCCCGGACAG CGCGCCGGGC
TCAAATCCCT GGCTTGGTAA ACAGACCAGC CTGAATCGCG CCATGAGTCT CATCGACGCC
GGCGTCTTGT GCGGCCCCCA GGCGATCCCT ATGACTGGGC TCGCCGAGCG ATTAGGGATC
AGCGAGCGTT ACCTGAGGCA ACTGTTTCAC GACAGCCTGG GCACCTCGCC CAAGCAATAT
GCCCTGTATC AACAGCTGAT GTTTGCCAAA CAGTTGCTGC ATCAGACCAA GATGCCGATC
ACTCAGGTGG CCTATGCCGC CGGGTTTAAC AGCGTGAGGC GCTTCAACGA GATCTTTCGC
CAGCAGCTGC AGTTGACCCC GAGTGAGATC CGTAAGGCCA CGGGCCAGCC GTCGCTGCCC
GTCCAGGGCC TGACACTCAA GCTTGCTTAT CGTCCGCCCT ATGATTGGCA ACACCTGCGC
AGCTTCTTCG CACAGCGCGC CGTGCCCGAG ATGGAGTGGC TAGATGAACA GAGCTATGGC
CGCAGCTTCG TGCTCGGCGC CGCCAAGGGC TATTTCTGCG CAGTCCATAG TGAGCAAGAG
GCCTGCTTTC ATGTCACCAT TCATCTCGCC GAGGCGGACT CACTCAGCCA GCTCAAGGGG
ATCATCAGTC ATATTCGTCG CATTCTGGAT CTCGACGCCG ACATGCTCAC CATAGGCGAT
AAGCTGCAAG CGCTGGGTAA GGCTCTGCCT CAGGTATCGC CTGGCCTGCG TCTGCCCGGC
GTCTGGTCGC CTTTCGAGGC GGCTTGCCGC GCCATCTTAG GTCAGCAGGT GAGTGTGACC
CAGGCGATCA AGCTCTTGGG GCAACTGGTG GCCGATCATG GCGAGACGAT TAGCCTAAAT
GAAAAAACGG TGCGTCTGTT CCCGACTCCT GCGGCGCTAG TGGATGCCAG CCTGGATGGG
CTTAAGATGC CGGGGATCAG AAAAGAGGCG ATTCGTGCCC TGGCGGCCTT TGTGATGGCT
AACCCCGAGT CGGAAATAGA CGACTGGCTA CAGATCAAGG GGATAGGCCC CTGGACTTTG
GATTATGTGC GCCTGCGGGG CCTGAGCCTG CCAGACGTGC TGCTGGTTGG CGATCTCGTG
GTCAAACAGC AACTGCTGGT GAACCTGCGA CCCGAGCCGT CCAGTTGTGA TGGTGAGCCT
GCTGAAGACG AAGATCCCAA GGCGGCGAAG AAGCGGGCGC AGGCACAATA TCAGGCGCTC
AGCCAAGCCG TGCTACGGCA GGTCGCCCCC TGGGGCAGTT ATCTCACCCT GCAGCTCTGG
AATCGGCAGT AG
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| Protein sequence | MQAEAQHPKA EQYRTARLSR DARFDGLFFV GVFSTGIFCR PICPAVPAKE ANVRYFDDAL
SAAQAGLRPC LRCRPDSAPG SNPWLGKQTS LNRAMSLIDA GVLCGPQAIP MTGLAERLGI
SERYLRQLFH DSLGTSPKQY ALYQQLMFAK QLLHQTKMPI TQVAYAAGFN SVRRFNEIFR
QQLQLTPSEI RKATGQPSLP VQGLTLKLAY RPPYDWQHLR SFFAQRAVPE MEWLDEQSYG
RSFVLGAAKG YFCAVHSEQE ACFHVTIHLA EADSLSQLKG IISHIRRILD LDADMLTIGD
KLQALGKALP QVSPGLRLPG VWSPFEAACR AILGQQVSVT QAIKLLGQLV ADHGETISLN
EKTVRLFPTP AALVDASLDG LKMPGIRKEA IRALAAFVMA NPESEIDDWL QIKGIGPWTL
DYVRLRGLSL PDVLLVGDLV VKQQLLVNLR PEPSSCDGEP AEDEDPKAAK KRAQAQYQAL
SQAVLRQVAP WGSYLTLQLW NRQ
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