| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1445 |
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| Symbol | |
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| ID | 4923778 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 1661993 |
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| End bp | 1662631 |
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| Gene Length | 639 bp |
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| Protein Length | 212 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 640162984 |
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| Product | tripartite ATP-independent periplasmic transporter DctQ |
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| Protein accession | YP_001093571 |
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| Protein GI | 127512374 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG3090] TRAP-type C4-dicarboxylate transport system, small permease component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.361291 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATGTCTC GCTTTTTTTC TCATATCGAA GAGGTGGTAC TTAACGCCTT GATCACCGCC
ATGACCCTAT TGGTCTTTGT CGAAGTGATC GCTCGTTTCT TCTTTAACAC AGGTTTCCTG
TGGATCCAGG AGCTGACGCT CACCATCTGC GGCTGGTTCG TGCTGTTTGG CATGTCCTAT
GGCGTCAAGG TCGGCGCCCA CATAGGCGTC GATGCCTTCG TGAAAAAACT CCCCGCCCAG
GGACGTAAGT ACACCGCCAT ATTGGCCGTA GCCATCTGCC TCATCTACTG CGGCATGTTC
CTGGTCGGCA GCTGGGATTA CCTGGCCAAG ATGTATCAAA TTGGCGTGCC CATGGAAGAT
ATCGACCTGC CCCATTTTCT GATTGGCGGA CTGGACGGCG ACTTTGCCTG GGAATACCTG
CGCATCGACG TCGAAGAGCC TGCTGTGCCG CTGTGGACCT CTCAAAGCAT ACTGCTCATC
GGCTTTATTC TGCTTACCTG GCGCTTCTTG CAGCTGGCTC TTGCCATCAT CACTAATAAA
ACCGACGGCT TTGCCTTTGC CGATGAGGCC AAGGAGAGCA TGCACCTTAT CGATCAAGAG
GCCCAGGCCG ACGACAAGCA GCCGGGAGAC AAAAAATAA
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| Protein sequence | MMSRFFSHIE EVVLNALITA MTLLVFVEVI ARFFFNTGFL WIQELTLTIC GWFVLFGMSY
GVKVGAHIGV DAFVKKLPAQ GRKYTAILAV AICLIYCGMF LVGSWDYLAK MYQIGVPMED
IDLPHFLIGG LDGDFAWEYL RIDVEEPAVP LWTSQSILLI GFILLTWRFL QLALAIITNK
TDGFAFADEA KESMHLIDQE AQADDKQPGD KK
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