| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1444 |
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| Symbol | |
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| ID | 4923554 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 1660596 |
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| End bp | 1661993 |
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| Gene Length | 1398 bp |
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| Protein Length | 465 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 640162983 |
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| Product | TRAP dicarboxylate transporter, DctM subunit |
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| Protein accession | YP_001093570 |
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| Protein GI | 127512373 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.538957 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTATAG CAACCCTCTT TATCAGCCTG TTTCTCTGTA TGCTGCTAGG CATGCCGATC
GCCATCGCCC TCGGCTTCTC CAGCATGTTG ACCATATTAC TCTTCTCCGA TGACTCACTG
GCCTCGGTCG CCTTGAAACT CTATGAGTCC ACCTCGGAGC ACTACACACT ACTGGCGATC
CCCTTCTTCA TTCTGTCGTC GGCGTTTCTC TCCACCGGCG GCGTCGCCAG GCGCATCATC
GACTTTGCCA TGGACAGTGT AGGTCATATT CGCGGTGGTC TCGCCATGGC CTCTGTCATG
GCCTGTATGT TGTTTGCCGC GGTATCTGGC TCATCCCCCG CCACGGTTGC CGCCATCGGC
TCTATCGTTA TCGTCGGCAT GGTTCGCGCC GGCTACCCTG AAAAGTTTGC CGCAGGGGTG
ATCACCACCT CAGGTACGCT AGGGATTTTG ATCCCGCCTT CTATCGTTAT GCTGGTCTAC
GCGGCGGCAA CGGAAGTCTC GGCGGCGCGT ATGTTCATGG CGGGGCTTAT CCCCGGTCTG
ATGATGGGAC TCTTGTTGAT GCTCGCCATC TATATCGTGG CCCGCATCAA GAAGCTGCCT
TCCCGTCCCT TCCCCGGTTT TCGTCCCCTG GCCATATCGA GCGCCAAGGC GATGGGCGGC
CTGGCGCTTA TCGTTATCGT GCTCGGCTCC ATCTATGGCG GTATCGCCAG CCCGACCGAG
GCGGCGGCGG TTGCCTGCGT CTACGCCTAT TTCATCGCGG TATTTGGTTA TCGTGATATC
GGCCCGCTGA AAAATGTCAG CTGGCGTGAT AGCGGCGAGC CGCTGATCAG AGCCATACTC
CGTAACCTGG GTTTCATGGT GCTGGCGGTT TTCAAGACCC CAGCCGACAA GGAGATCCGC
CACGTGGTGC GCGATGGTGC CAAGGTCAGC ATCATGCTGC TGTTCATCAT AGCCAACGCC
ATGCTGTTCG CCCACGTGCT CACCACAGAG CGCATTCCGC ACCTAATTGC CGAGACCATA
GTGGGCATGG GACTGCCGGT ATGGGGCTTC CTCATCATAG TCAACTTGCT GCTGCTGGCA
GCGGGTAACT TTATGGAACC ATCGGCCATC TTGTTGATCA TGGCGCCTAT CTTGTTCCCG
ATCGCCACCC AGCTGGGGAT AGACCCTATC CACCTAGGGA TCATCATGGT GGTGAACATG
GAGATAGGCA TGTTGACGCC GCCTGTGGGA CTCAACCTGT TTGTGACCGC GGGGATCACC
GGCCGCAGCA TGGGATGGGT GATCCACTCC TGTATCCCTT GGCTGGCGCT GCTGCTCTTC
TTCCTGGCGC TGATCACTTA TATTCCGCAG ATCTCTCTGT TCCTGCCGGA ATATATTGAT
AAGTTAAACG GTTATTAA
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| Protein sequence | MTIATLFISL FLCMLLGMPI AIALGFSSML TILLFSDDSL ASVALKLYES TSEHYTLLAI
PFFILSSAFL STGGVARRII DFAMDSVGHI RGGLAMASVM ACMLFAAVSG SSPATVAAIG
SIVIVGMVRA GYPEKFAAGV ITTSGTLGIL IPPSIVMLVY AAATEVSAAR MFMAGLIPGL
MMGLLLMLAI YIVARIKKLP SRPFPGFRPL AISSAKAMGG LALIVIVLGS IYGGIASPTE
AAAVACVYAY FIAVFGYRDI GPLKNVSWRD SGEPLIRAIL RNLGFMVLAV FKTPADKEIR
HVVRDGAKVS IMLLFIIANA MLFAHVLTTE RIPHLIAETI VGMGLPVWGF LIIVNLLLLA
AGNFMEPSAI LLIMAPILFP IATQLGIDPI HLGIIMVVNM EIGMLTPPVG LNLFVTAGIT
GRSMGWVIHS CIPWLALLLF FLALITYIPQ ISLFLPEYID KLNGY
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