| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1427 |
|---|
| Symbol | |
|---|
| ID | 4920613 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 1643151 |
|---|
| End bp | 1643945 |
|---|
| Gene Length | 795 bp |
|---|
| Protein Length | 264 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 640162966 |
|---|
| Product | 3'(2'),5'-bisphosphate nucleotidase |
|---|
| Protein accession | YP_001093553 |
|---|
| Protein GI | 127512356 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1218] 3'-Phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase |
|---|
| TIGRFAM ID | [TIGR01331] 3'(2'),5'-bisphosphate nucleotidase, bacterial |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.839377 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.0817385 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAGTCATA TATTTAAGCA AGAATGGTTA GATGAGTTGG TCGAGATCGC TAAGAAGGCG
GGCGATGCCA TCATGCAGGT CTATGGCAGC GACCAGATGG ATATTCAGGC CAAGGCCGAC
GATAGCCCTG TGACCGCGGC CGATCTGGCC AGCCACAAGG TGATCGTCGA GGCGCTTGCG
CATCTGACGC CAGACATTCC CGTGATGTCT GAAGAGGCCG CCGATATTCC CTGGGAGACG
CGTAAGCAGT GGCAGCAGTA TTGGCTTATC GACCCACTGG ATGGCACCAA AGAGTTTATT
AAGCGTAACG GTGAGTTCAC CGTTAATATC GCCTTTATCG ACAAGGGCCG CGCCCTCGCT
GGGGTCGTCT ATGCGCCCGT GCTGGATAAA TGTTATTACG GCGCCCAGCA TCTTGGCGCC
TGGTTGGCCA GCGCCGATGG GGTGACAGAT TTGAACCAGC TGGCGGTTGC GGCGCCGAAT
GTGCCCAGGA TTGTCGGCAG TCGCTCCCAT GTGAGCCCTG GGCTTGCGGC CTATCTCGAG
GAGATAGGCG AACATGAGAT GACCAGTATC GGCAGCTCGC TGAAGTTTTG TCTGCTGGCC
GAAGGCAAGG CGGATATCTA TCCCCGCCTG GGTCTGACCA GCGAGTGGGA CACGGCGGCG
GCGCAGGCAG TGTTGGAAAG TGTTGGCGGT CTTGTGGTGA ATGCCGATAA CGGCCAGCCG
CTGGACTATA ACCAGAAAGA AGATATTTTG AATCCCTACT TTATCGCCAC CGCAAAGCAT
TGGCGCGATA AGTAA
|
|---|
| Protein sequence | MSHIFKQEWL DELVEIAKKA GDAIMQVYGS DQMDIQAKAD DSPVTAADLA SHKVIVEALA
HLTPDIPVMS EEAADIPWET RKQWQQYWLI DPLDGTKEFI KRNGEFTVNI AFIDKGRALA
GVVYAPVLDK CYYGAQHLGA WLASADGVTD LNQLAVAAPN VPRIVGSRSH VSPGLAAYLE
EIGEHEMTSI GSSLKFCLLA EGKADIYPRL GLTSEWDTAA AQAVLESVGG LVVNADNGQP
LDYNQKEDIL NPYFIATAKH WRDK
|
|---|
| |