| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1424 |
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| Symbol | |
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| ID | 4923519 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 1638702 |
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| End bp | 1640429 |
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| Gene Length | 1728 bp |
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| Protein Length | 575 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 640162963 |
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| Product | TrkA domain-containing protein |
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| Protein accession | YP_001093550 |
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| Protein GI | 127512353 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG0471] Di- and tricarboxylate transporters |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0976124 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.0212336 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACATTTA ACGCTTATCT CACCATCGCC ATCTTCCTCG CGACTATCGT GGGGTTAGTG
CGTTTCCAAA ACCGGCCGGC GTTGGTGTTT GGCGTGACCC TGCTGGTGCT GGTGGCGTTT
AATCTGGTGA CCAAGGAGCA ACTGCTCTCC AGCATGTCTA ATCCTGGCCT GGTAACCTTG
GTACTGCTGA TCCTCTGCTC CTTTGCATTG GAGAAGACCC GGCTGCTGCG GGTCATCGCC
GCCAAGGTTA TCGTCAGCGG CTACCGTACC ACCTGGCTAC GCCTGTACGG CATGACGGCA
CTGAGCTCGG CTCTGCTTAA CAATACCGCC GTGGTGGCCA CCCTGTTGTC GCCCATTCGC
AATAATCCGC ATCATGTGGC GAGTAAGTTA TTACTACCCC TGTCTTACGC GGCGATACTG
GGCGGTACCC TGACCCTGGT GGGCACCTCG ACCAACCTTA TCGTCAATAG TATGGTGATT
GATGCCTCAA ACCAGTCGCT CTCTTTCTTC TCTTTCACCG CCATCGGCGC CTTGCTGGTG
CTGGGCTGTG GTCTGGTGCT GCGTATCGCC TCAAGATGGC TGCCGGATAT CGCTCACCAG
GAGACCTGCT CCAAGGGCTA CTTTATCGAT GCCAAGGTGG TAGCAGGCTC CGAGCTAATT
GGTCGTTCGG TGGAAGACAA CGGCCTCAGG CATCTCGAAT CCCTGTTCCT GGTTGAGGTG
GTGCGTAATG GTCGCCTCAT CAGCCCTGTG ACGCCCACCG AGGTGCTGCA GCAGGATGAC
AGGCTGATCT TCAGCGGCGA TATCGCCAAG GTGATGCAGC TTAGTCAGTT CTCTGGTCTT
GAGATGTTTG CCGAAAAAAA TGGCCTGCTC GACAGCAACC TCACCGAAGT GGTGGTAAAG
CAAGAGAGCG TACTGGTGGG TAAGACCATG AAGAAGGCGG GCTTTCGCGC CCTGTTTGAC
GCCGCTGCGG TGGCCATTCG CCGTGACGGC GAAGAGATCT CGGGAAAGCT CGGTGAGGTG
CAGATCAAGG CGGGCGACTT CTTAGTGCTG GCTGTCGGTA AGGACTTCCT TACCCGCCAC
AACATCAGCA AGAACTTTAT CGTCATCAGC GGCGTCGAGC CCGAGACCCG TAACAATGGC
AAGAAGGCCT GGATCTCTAT CGGCGGTTTC GTGCTGACAC TGGTGCTCGC CGCCACAGGC
GTGGTGGAGA TGCTCCAAGG GATGTTACTG CTGCTGGGCG TGTTGATCTT CACCCAGTGC
CTCAACGTCA ACGAAGTGGT TCGCCGCTTC CCTGTGGATA TCTGGCTGGT GGTGGCCTCG
GCCATCTTGC TCTCCCATGC CCTGGTCAAC AGCGGCGTGG CCGAGCTGGT GGCCAGCTGG
GTAGAGGGAA CGGCGGAGAA AGAGCATCTT ATGCTGGCGT TATTGCTGGT TTATCTCGCC
ACCTGGCTGA TGACAGAGCT CATTACCAAT AACGCGGCGG CGGCGCTGAT GTTCCCTATC
GCCTACAGCA TAGCACTGGG CTTCGGGGTG GACTTCTTAC CCTTCGTGAT GACGGTGGCT
TTTGCCGCCA GCGGCAGCTT CATCAGCCCC TATGGTTATC AGACCAACCT CATGGTGTAT
AACGCCGGTC GCTATCGCCT GATGGATTTT GTTAAAGTGG GCGTGCCCGT GAGCCTGACT
TATGGGGCCA TAGTCCTACT GACAGTGCCT TTGTTTTTCC CGTTTTAG
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| Protein sequence | MTFNAYLTIA IFLATIVGLV RFQNRPALVF GVTLLVLVAF NLVTKEQLLS SMSNPGLVTL
VLLILCSFAL EKTRLLRVIA AKVIVSGYRT TWLRLYGMTA LSSALLNNTA VVATLLSPIR
NNPHHVASKL LLPLSYAAIL GGTLTLVGTS TNLIVNSMVI DASNQSLSFF SFTAIGALLV
LGCGLVLRIA SRWLPDIAHQ ETCSKGYFID AKVVAGSELI GRSVEDNGLR HLESLFLVEV
VRNGRLISPV TPTEVLQQDD RLIFSGDIAK VMQLSQFSGL EMFAEKNGLL DSNLTEVVVK
QESVLVGKTM KKAGFRALFD AAAVAIRRDG EEISGKLGEV QIKAGDFLVL AVGKDFLTRH
NISKNFIVIS GVEPETRNNG KKAWISIGGF VLTLVLAATG VVEMLQGMLL LLGVLIFTQC
LNVNEVVRRF PVDIWLVVAS AILLSHALVN SGVAELVASW VEGTAEKEHL MLALLLVYLA
TWLMTELITN NAAAALMFPI AYSIALGFGV DFLPFVMTVA FAASGSFISP YGYQTNLMVY
NAGRYRLMDF VKVGVPVSLT YGAIVLLTVP LFFPF
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