| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1418 |
|---|
| Symbol | |
|---|
| ID | 4922035 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 1631972 |
|---|
| End bp | 1632892 |
|---|
| Gene Length | 921 bp |
|---|
| Protein Length | 306 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 640162958 |
|---|
| Product | UTP-glucose-1-phosphate uridylyltransferase GalU |
|---|
| Protein accession | YP_001093545 |
|---|
| Protein GI | 127512348 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1210] UDP-glucose pyrophosphorylase |
|---|
| TIGRFAM ID | [TIGR01099] UTP-glucose-1-phosphate uridylyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.0173335 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGGGGTT GTCTGTTTTA TCATATTGGA TTTTTTATGA AAGTTGTTAT TCCTGTTGCA
GGTCTTGGCA CGCGCATGTT GCCTGCAACC AAAGCCATAC CGAAAGAGAT GTTGCCGCTA
GTTGACAAGC CACTCATTCA ATATATTGTT AACGAGTGCG TATCAGCTGG TGTGAAAGAG
ATTGTATTGG TAACTCATGC GAGTAAGAAT GCTATCGAGA ACCATTTTGA TACTTCCTAT
GAACTTGAGT CTACGCTTGA GAAGCGTGTA AAGCGTCAGT TACTGGACGA GGTGCAATCA
ATTTGCCCCA AAGATGTGAC CATCATGCAC GTGCGCCAAG GCGAGGCTAA GGGGCTTGGT
CATGCCGTAC TTTGTGCTAA ACCTTGTATT GGCAATAACC CTTTCGCTGT CGTATTGCCG
GATGTGATCT TAGATGAGTA CAGTGCCGAT CAAAGCTCAG AAAACCTTGC GGCAATGATT
AAACATTATA AAGCGACTCA AGCTAGCCAA ATCATGGTAG CGCCAGTGGC TCTAGATGAA
GTTAACAAGT ACGGAATTGC CGATTGCGGC GGAGTGAATA TCGAACCTGG TGAATCATCA
GTTATTAAGG CTATGGTTGA AAAGCCTGCT ATTGATGAAG CCCCGTCTAA TCTTGCTGTT
GTAGGTCGTT ACGTTTTGTC TGAAAAAATC TGGGACTTGC TGGCTAAAAC CCCTGCTGGT
GCAGGGGATG AAATCCAATT GACAGACGCA ATCGACATGT TGATTGAATC TGACACTGTC
GAAGCCTTCA ATATGACAGG TAAGTCTCAC GATTGTGGCG ACAAGCTTGG TTATATGGCA
GCCTTTGTTG AATACGGCCT GCGTAATGAA AAGCTGGGTA AAGAGTTTCG TCAGCAGTTA
GATAACCTGC TAGCACAATA A
|
|---|
| Protein sequence | MGGCLFYHIG FFMKVVIPVA GLGTRMLPAT KAIPKEMLPL VDKPLIQYIV NECVSAGVKE
IVLVTHASKN AIENHFDTSY ELESTLEKRV KRQLLDEVQS ICPKDVTIMH VRQGEAKGLG
HAVLCAKPCI GNNPFAVVLP DVILDEYSAD QSSENLAAMI KHYKATQASQ IMVAPVALDE
VNKYGIADCG GVNIEPGESS VIKAMVEKPA IDEAPSNLAV VGRYVLSEKI WDLLAKTPAG
AGDEIQLTDA IDMLIESDTV EAFNMTGKSH DCGDKLGYMA AFVEYGLRNE KLGKEFRQQL
DNLLAQ
|
|---|
| |