| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1410 |
|---|
| Symbol | |
|---|
| ID | 4923267 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 1623567 |
|---|
| End bp | 1624721 |
|---|
| Gene Length | 1155 bp |
|---|
| Protein Length | 384 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 35% |
|---|
| IMG OID | 640162951 |
|---|
| Product | glycosyl transferase, group 1 |
|---|
| Protein accession | YP_001093538 |
|---|
| Protein GI | 127512341 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0438] Glycosyltransferase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.00834498 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAGCTTAA AAATGAAATT AATTTATGTA GTTGAAAGCT CCGTACCATA TGGAGCAAAT
AAATGTTTAA TTGAAATTAT TGATAGGTTA GATAAAGACA AACATGAGGT AATGGTTGTA
GGCGCTGATG AAGGAGCTCT ATCATCATGG CTTAGAGAGA GAAATGTTTC ATATGTTTCT
TTAAATCATC GATTATCAAT ATATCCAGTC TTAAATAGTA GGAAAGATTA TCTGTTGTGG
CTTCCGAGAC TTTTTCGGAG AGTAGCATTA AACGTTATTG CGATGGTCAA GTTTTTTAAA
ATATGCAAGC GTTTTAAACC TGACATTGTG CATACTAATG TTGGGCCGTG TTCATTAGGC
TATTTTGTAG CAACATATCT GGGAATAAAG CACGTTTGGC ACGTCAGGGA ATATCAAGAT
TTGGACTTTG GAATGTCATT CTTTCCAAAT AGAAAAGCTT TCCTTAAGCG CCTTAAACGT
TCAGATGCCG TTATATGTAT TACTAATTCC ATAGCTGCTC ATTTTCATTT GACGGATAAT
GAAAACTTAG CCGTGATAAA TGACGGCGTT ATTTCAGATG AAAAAGAAAT AGATATTATT
CAGAAAGAAA ATTATTTTCT TTTTGCTGGT AGGTTAGAGG CTGCAAAAGG TATAGAAGAG
GCTATTGAAT CATTTTTTGA GTTTTGCGAA ACAGACTCAT CCGGTATTAG CTTTTATGTC
GCTGGTGACG GTAACTTTAA TTACTTAAAA AAATTAAAGG AAAAGGTTTC AAAGAGTAAT
TTCAGTAATA GGGTTAGATT TTTAGGTTTC AGGGATGATA TTTTTGCACT AATGCGAATG
GCTAAGGCCC TGGTAGTAGC ATCAAGGTGT GAGGGGTTTG GCTTGATAAC GGCGGAGGCT
ATGTATCAAG GTACTTTAGT TATTGGACGC GATACTGGTG GAACCTCGGA GATATTAAAA
GACAGTAAAG GGATTCATTA CGGCTTTCTG TTTAATTCTA TAGATGAACT CACGAAATTA
ATGCATGAGG TGGTTGATTT AAGTCCTGAT GAGTATACAA AAATGGCTCG CTCAGCTCAA
AGAAGAACTT TAGATAAATA TACCATCAAT AGAAATTTCC GTGAAATATC TGATGTGTAT
AATACCCTTA TGTAA
|
|---|
| Protein sequence | MSLKMKLIYV VESSVPYGAN KCLIEIIDRL DKDKHEVMVV GADEGALSSW LRERNVSYVS
LNHRLSIYPV LNSRKDYLLW LPRLFRRVAL NVIAMVKFFK ICKRFKPDIV HTNVGPCSLG
YFVATYLGIK HVWHVREYQD LDFGMSFFPN RKAFLKRLKR SDAVICITNS IAAHFHLTDN
ENLAVINDGV ISDEKEIDII QKENYFLFAG RLEAAKGIEE AIESFFEFCE TDSSGISFYV
AGDGNFNYLK KLKEKVSKSN FSNRVRFLGF RDDIFALMRM AKALVVASRC EGFGLITAEA
MYQGTLVIGR DTGGTSEILK DSKGIHYGFL FNSIDELTKL MHEVVDLSPD EYTKMARSAQ
RRTLDKYTIN RNFREISDVY NTLM
|
|---|
| |