| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1407 |
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| Symbol | |
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| ID | 4921267 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 1619923 |
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| End bp | 1620663 |
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| Gene Length | 741 bp |
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| Protein Length | 246 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 640162948 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_001093535 |
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| Protein GI | 127512338 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.00828182 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | TTGCTAAAAG GTAAAAAAAT ATTGGTAACA GGAGGTGGGT CCGGAATAGG GCTCGCAATA
GCGAAAAGAG CATTAAATCG TGGCGCATCT GTTTTGATAT GTGGTAGAGA CAAAATTAAG
TTAGATAACG TAATTAAAGA AGTTGACGAC TCAAATTTAA AGATGTTGTC ACTTGATGTA
AGTGATATTA GCTCGCATAA AGATAGCCTG GAACAGGCTG TACAGTTACT TGGTGGCGAA
ATCGATATCT TGGTTAATAA CGCCGGTATC ATTGATGGCG CAGATTTCTT GCAAGTGAGT
GAGGAGACTT GGGATAGAAT TTACGCTGTA AACTGTAAGG GGATGTATTT TTTATCACAA
TCGATTTGTA GTCGCTGGAT TAATAAGGGC TGCACTAATG GCCGCCGTAT TTTAAATATT
TCTTCTCAAG GTGGTTATGT CGCGGCTACT TATCCTTACA GATTAAGTAA ATGGGATGTT
GTTGGAATGA CTCAGGGGCT TGCTTTGAAA CTAGCTCCTT TAGGTATATT GGTTAATGGT
TTGGCGCCTG GAATAGTTGC TACTGATATG CAAAAAGATT TAGTAAAAGA TGATACGAAT
GCCTTTTTGC CTTTGAATCC ATTACAAAGA CATGCGTCGC CAGATGAAAT TGCTGAGCTC
GCTGTGTTTT TAGTCAGCGA CTCCTGTAGC TTTATTGTTG GACAAACGAT CGTTTGTGAT
GGCGGGTTCA TTCTTAAGTA A
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| Protein sequence | MLKGKKILVT GGGSGIGLAI AKRALNRGAS VLICGRDKIK LDNVIKEVDD SNLKMLSLDV
SDISSHKDSL EQAVQLLGGE IDILVNNAGI IDGADFLQVS EETWDRIYAV NCKGMYFLSQ
SICSRWINKG CTNGRRILNI SSQGGYVAAT YPYRLSKWDV VGMTQGLALK LAPLGILVNG
LAPGIVATDM QKDLVKDDTN AFLPLNPLQR HASPDEIAEL AVFLVSDSCS FIVGQTIVCD
GGFILK
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