| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1383 |
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| Symbol | fliA |
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| ID | 4922517 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 1592733 |
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| End bp | 1593452 |
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| Gene Length | 720 bp |
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| Protein Length | 239 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640162924 |
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| Product | flagellar biosynthesis sigma factor |
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| Protein accession | YP_001093511 |
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| Protein GI | 127512314 |
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| COG category | [K] Transcription |
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| COG ID | [COG1191] DNA-directed RNA polymerase specialized sigma subunit |
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| TIGRFAM ID | [TIGR02479] RNA polymerase sigma factor, FliA/WhiG family
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0146638 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.275923 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | GTGAGTAAAG CCGCTGCGTA TACTTGTTTA GATAACAAAG CTTCTATTGT CGAACAGTAT
GCACCGTTGG TAAAAAGGAT TGCTCACCAT TTACTCGCTC GTCTACCCGC CTCGGTGCAA
TTGGATGATC TGTTACAAGC AGGTATGATG GGCCTGCTTG AAGCCTCGGC CAAGTTCGAT
GGCAGCAAGG GTGCCAAGTT TGAAACCTTC GCCGGTATAC GTATTCGCGG CTCCATGCTC
GACGAGATTA GGCGAGGAGA CTGGGTACCC AGGTCGGTTC ACCGTAATCA GCGACGCATA
GCCCAGGTGA TTGACGAGCT AGAACAAGAA CTTGGACGTG ACGCAAAAGA CAATGAAATT
GCGGATCGAC TTGATATGAC GCTCGATGAG TACCATCATA TTCTTAATGA TGTTTCCGTC
GGGAAAGTAG TTGGAATTGA AGATCTTGGT GTATCGGTCG ATGTAGTAAG ACAGGAAGAC
GATCATCAGG ACGACGCATT TGAGTCACTG GCAGAGACAC AGTTCCACGA GGCCCTCGTC
GAGGCGATTA AATTACTGCC AGAAAGAGAT GGATTAGTTT TGTCGTTATA TTATGACGAA
GCATTAAATT TAAAAGAGAT CGGTGCCGTA CTTGATGTAA GCGAATCCCG AGTAAGCCAG
ATACACAGCC AGGCGATGCT CAGACTCAAA GCTAAACTCA AGCATTGGAC CAAAATATAA
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| Protein sequence | MSKAAAYTCL DNKASIVEQY APLVKRIAHH LLARLPASVQ LDDLLQAGMM GLLEASAKFD
GSKGAKFETF AGIRIRGSML DEIRRGDWVP RSVHRNQRRI AQVIDELEQE LGRDAKDNEI
ADRLDMTLDE YHHILNDVSV GKVVGIEDLG VSVDVVRQED DHQDDAFESL AETQFHEALV
EAIKLLPERD GLVLSLYYDE ALNLKEIGAV LDVSESRVSQ IHSQAMLRLK AKLKHWTKI
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