| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1378 |
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| Symbol | fliR |
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| ID | 4922893 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 1586236 |
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| End bp | 1587033 |
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| Gene Length | 798 bp |
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| Protein Length | 265 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 640162919 |
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| Product | flagellar biosynthesis protein FliR |
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| Protein accession | YP_001093506 |
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| Protein GI | 127512309 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1684] Flagellar biosynthesis pathway, component FliR |
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| TIGRFAM ID | [TIGR01400] flagellar biosynthetic protein FliR |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.720864 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.279429 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGAGATCT TGCTATCGAC TATCATGCAG ACGCTGTCGG CCTATATGTG GCCGCTGTTT
CGAGTGTCGA GCATGTTGAT GGTGATGGCG GTATTTGGCG CCAATACCAC ACCGACCCGT
GTGCGCCTGC TGCTTTCGGT GGCGATCACC TTCGCCATCG CCCCCATGTT GCCGGTCAAT
ACCGAGGTCG AGCTATTTTC ATTAGGCGCC GTGTTCGTGA CCGTGCAGCA GATCTTGATT
GGCGTTGCCA TGGGGTTTGT CACCTTGCTT ATCATGCAGA CCTTCGTGTT GACCGGACAG
ATCATCGGCA TGCAGACCAG CTTAGGTTTC GCCTCCATGG TGGACCCCGG CTCAGGCCAG
CAGACCCCGG TTATCGGTAA CTTCTTCTTG CTGCTGACGA CCATGATCTT CTTGGCGGTG
GATGGTCATC TGGTGATGAT CCGCATGTTG GTGGCCAGCT TCGATACCAT TCCCGTGTCC
ATGCAAGGAA TAAGCATCGC TAGCTATCGG CGTCTGGCGG AGTGGGGCGC CTATATGTTC
GGTGCGGCGC TGACCATGTC CATCTCGGCG ATTGTGGCGC TCTTGCTGAT CAACCTCTCT
TTCGGGGTGA TGACCCGCGC CTCGCCGCAG CTTAACATCT TCGCCATCGG TTTCCCCGTG
ACCATGGTGA GTGGTTTGAT TATTCTCTGG TTGACCTTGA CGCCTATTAT GGCGCATTTC
GACGAGGTCT GGCGTTCGGC CCAGTTGTTG CTGTGCGATC TGGTGCAGCT GCAATGTAGC
ACTGCTGGGA GCTTCTGA
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| Protein sequence | MEILLSTIMQ TLSAYMWPLF RVSSMLMVMA VFGANTTPTR VRLLLSVAIT FAIAPMLPVN
TEVELFSLGA VFVTVQQILI GVAMGFVTLL IMQTFVLTGQ IIGMQTSLGF ASMVDPGSGQ
QTPVIGNFFL LLTTMIFLAV DGHLVMIRML VASFDTIPVS MQGISIASYR RLAEWGAYMF
GAALTMSISA IVALLLINLS FGVMTRASPQ LNIFAIGFPV TMVSGLIILW LTLTPIMAHF
DEVWRSAQLL LCDLVQLQCS TAGSF
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