Gene Shew_1374 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_1374 
SymbolfliN 
ID4921828 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp1584381 
End bp1584764 
Gene Length384 bp 
Protein Length127 aa 
Translation table11 
GC content56% 
IMG OID640162915 
Productflagellar motor switch protein 
Protein accessionYP_001093502 
Protein GI127512305 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG1886] Flagellar motor switch/type III secretory pathway protein 
TIGRFAM ID[TIGR02480] flagellar motor switch protein FliN 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.480393 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.143651 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCACAG AAGATACAGG TGACGATTGG GCCGCAGCCA TGGCCGAACA GGCGCTGGAG 
GAGGCTCAGG CGGTCGAACT CGACGAGCTG GCCGATAGCT CAAAGCCGCT GACCGAAGAG
GAAGCGGCCA AACTCGATAC CATCATGGAT ATTCCTGTGA CCATCTCCAT GGAGGTGGGC
CGCAGCTTCA TCAATATTCG TAACCTGCTG CAGCTCAACC AGGGCTCAGT GGTGGAGCTT
GACCGGGTGG CCGGTGAGCC GCTGGATGTG ATGGTAAACG GTACCCTGAT CGCCCACGGT
GAAGTGGTGG TGGTCAACGA CAAGTTTGGT ATTCGTCTCA CCGACGTTAT CAGCCAAACC
GAGCGTATTA AGAAACTCAA ATAA
 
Protein sequence
MSTEDTGDDW AAAMAEQALE EAQAVELDEL ADSSKPLTEE EAAKLDTIMD IPVTISMEVG 
RSFINIRNLL QLNQGSVVEL DRVAGEPLDV MVNGTLIAHG EVVVVNDKFG IRLTDVISQT
ERIKKLK