Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_1374 |
Symbol | fliN |
ID | 4921828 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 1584381 |
End bp | 1584764 |
Gene Length | 384 bp |
Protein Length | 127 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 640162915 |
Product | flagellar motor switch protein |
Protein accession | YP_001093502 |
Protein GI | 127512305 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1886] Flagellar motor switch/type III secretory pathway protein |
TIGRFAM ID | [TIGR02480] flagellar motor switch protein FliN |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.480393 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.143651 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCACAG AAGATACAGG TGACGATTGG GCCGCAGCCA TGGCCGAACA GGCGCTGGAG GAGGCTCAGG CGGTCGAACT CGACGAGCTG GCCGATAGCT CAAAGCCGCT GACCGAAGAG GAAGCGGCCA AACTCGATAC CATCATGGAT ATTCCTGTGA CCATCTCCAT GGAGGTGGGC CGCAGCTTCA TCAATATTCG TAACCTGCTG CAGCTCAACC AGGGCTCAGT GGTGGAGCTT GACCGGGTGG CCGGTGAGCC GCTGGATGTG ATGGTAAACG GTACCCTGAT CGCCCACGGT GAAGTGGTGG TGGTCAACGA CAAGTTTGGT ATTCGTCTCA CCGACGTTAT CAGCCAAACC GAGCGTATTA AGAAACTCAA ATAA
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Protein sequence | MSTEDTGDDW AAAMAEQALE EAQAVELDEL ADSSKPLTEE EAAKLDTIMD IPVTISMEVG RSFINIRNLL QLNQGSVVEL DRVAGEPLDV MVNGTLIAHG EVVVVNDKFG IRLTDVISQT ERIKKLK
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