| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1366 |
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| Symbol | fliF |
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| ID | 4922703 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 1575039 |
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| End bp | 1576736 |
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| Gene Length | 1698 bp |
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| Protein Length | 565 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 640162907 |
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| Product | flagellar MS-ring protein |
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| Protein accession | YP_001093494 |
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| Protein GI | 127512297 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1766] Flagellar biosynthesis/type III secretory pathway lipoprotein |
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| TIGRFAM ID | [TIGR00206] flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTAGTCG GAACTGGCGC TGGCACAACA CAGGATATGT TGGCAGGCGG CGTACAAGAA
GAACATAAGC CGAGCGGCGG AATGTTTGGC GGTGTCGACA TGCTCAGACA GATCACCATG
ATCCTGGCGC TGGCTATCTG TCTGGCGTTG GCCGTCTTCG TCATGTTGTG GGCTCAGGAG
CCCGAATACC GTCCTCTGGG TAAGATGGAT ACTCAGGAGA TGGTGCAGGT CCTGGATGTG
CTGGACAAGA ACAAGGTCAA CTATCAGATC GATGTCGATG TGCTCAAGGT GCCGGAAGAT
CAGTACCAAG ACGTCAAGAT GATGCTGAGC CGCGCCGGTA TCGATAACTC GCCGAGTCGT
GACGATTACC TATCAAAAGA CAGCGGCTTT GGCGTGAGCC AGCGCATGGA GGCCGCCAGA
CTCAAGAACA GCCAGGAGCA AAACCTGGCA CGTACCATCG AAGAGTTAAA GAGCGTCAGC
CGCGCCAAGG TGATCCTGGC CATTCCTAAA GAGAATGTGT TTGCCCGTAA TCGCTCCAAG
CCAAGTGCAA CCGTGGTGGT TAATACCCGC CGTGGCGGTC TGGGTCAGGA GGAGGTCGAT
TCCATCGTAG ATATCGTTGC CTCGGCGGTG CACGGTCTCG AGCCGACTCG AGTCACTGTG
ACCGATGCTA ACGGTCGCCT GCTAAACTCG GGCAGTCAAA CTGCAGGCTC GGCCAGAGCC
AGACGCGAGC TCGAGCTGGT GCAGCAGAAA GAAGCCGAAT ACCGCAGCAA GATTGAATCG
ATTCTGATGC CGATTCTGGG GCCGGAAAAC TTTACCGCTC AGGTCGACGT GAACATGGAC
TTCACCTCGG TCGAGCAGAC CGCCAAGCGT TATAACCCGG ATCTGCCCGC GGTGCGCAGC
GAGATGACGG TTGAGAATAA CTCTACCGGT GCCAGCACTG GCGGCATCGC CGGCGCGCTG
AGCAACCAGC CACCGATGGA AGCCAATATT CCTCAGCAGG CTACCGGGAC TAGTGCTCAG
GAGCAGACCC TGCCGGGTTC TAGCCACAAG GAGGCAACCC GCAATTATGA GCTAGACACC
ACCATCAGCC ATACCCGCCA GCAGGTGGGG GTGGTCAGAC GGGTTAGCGT GTCGGTGGCG
GTCGATTTCA AGACGGGACC TGCCGGTGAA GACGGTCAGG TGACCCGCGT TGCTCGCACC
GAGCAGGAGC TGAGCAACAT ACGCCGCCTG CTAGAAGGGG CTGTAGGTTT CAATACCCAA
CGTGGCGACA TGATAGAGGT GGTCACAGTT CCCTTCATGG ATCAACTGGT AGAAGAGGCG
CCAGCGCTGG CTATCTACGA GGAGCCTTGG TTCTGGCGAG CCATCAAGCT AGTGATGGGC
GGTCTAATCA TCCTGGTGCT TATTCTGTTC GTGGTGCGCC CTATGCTCAA GCGCCTTATC
TACCCAGATG GTCAGAAGAT GCCGGATGCG CCATCTTTGG GTGATGAGTT AGCGGAGATT
GAGGATCAGT ATGCCGCCGA TACCCTTGGC ATGCTTAATC GTCCCGATGC GGAATACAGC
TACGCCGATG ATGGGTCAAT TTTGATACCG GATCTGCATA AAGACGATGA TATGATAAAG
GCCATACGTG CATTGGTGGC CAACGAGCCT GAGTTGTCTA CGCAAGTCGT CAAGGGATGG
TTACAAGAAA ATGAGTAA
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| Protein sequence | MVVGTGAGTT QDMLAGGVQE EHKPSGGMFG GVDMLRQITM ILALAICLAL AVFVMLWAQE
PEYRPLGKMD TQEMVQVLDV LDKNKVNYQI DVDVLKVPED QYQDVKMMLS RAGIDNSPSR
DDYLSKDSGF GVSQRMEAAR LKNSQEQNLA RTIEELKSVS RAKVILAIPK ENVFARNRSK
PSATVVVNTR RGGLGQEEVD SIVDIVASAV HGLEPTRVTV TDANGRLLNS GSQTAGSARA
RRELELVQQK EAEYRSKIES ILMPILGPEN FTAQVDVNMD FTSVEQTAKR YNPDLPAVRS
EMTVENNSTG ASTGGIAGAL SNQPPMEANI PQQATGTSAQ EQTLPGSSHK EATRNYELDT
TISHTRQQVG VVRRVSVSVA VDFKTGPAGE DGQVTRVART EQELSNIRRL LEGAVGFNTQ
RGDMIEVVTV PFMDQLVEEA PALAIYEEPW FWRAIKLVMG GLIILVLILF VVRPMLKRLI
YPDGQKMPDA PSLGDELAEI EDQYAADTLG MLNRPDAEYS YADDGSILIP DLHKDDDMIK
AIRALVANEP ELSTQVVKGW LQENE
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