| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1362 |
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| Symbol | |
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| ID | 4921809 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 1570438 |
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| End bp | 1571871 |
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| Gene Length | 1434 bp |
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| Protein Length | 477 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640162903 |
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| Product | sigma-54 dependent trancsriptional regulator |
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| Protein accession | YP_001093490 |
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| Protein GI | 127512293 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATGCAAA CAGATCAACG AATTCTACTT GTCGGTAATC AGTCAGAGCG AATTAATCGC
TTATCTTGTG TTTTTGAGTT TCTTGGTGAG CAGGTAGAGT TGCTTGCCGT CGACAGACTC
GAATCTCGAA TGTCGAATAC CCGCTATAGA GCACTTGTCA TTGCACAAGA GGCTCAATCT
AAGACCTTGT TGCAATCTAT TGCCACCTCA ATGCCTTGGC AACCCATCTT GTTGTTAGGC
TCTAATGGCG ACGTGACTGC AGGCAATGTA TTAGGTTGTA TTGAAGAGCC GTTAAATTAT
CCTCAGTTGA CCGAACTCCT GCATTTTTGC CAGGTGTTTG TGCAGGCTAA GCGTCCGGAT
ATACCTACCA GTGGTAACCA GACTAAGTTA TTTCGCAGCC TGGTGGGCCG CAGTGAAGGT
ATCGCCCAGG TGCGTCACCT GATCAACCAG GTGGCCGGTT CCGATGCCAC CGTATTGGTT
CTAGGTCAGT CTGGTACCGG CAAAGAGGTG GTTGCACGCA ATATCCACTA TATTTCCGAT
CGCCGTGATG GCCCCTTCAT CCCGGTAAAC TGTGGCGCCA TTCCGCCAGA ATTGCTCGAG
AGTGAGCTGT TTGGTCATGA GAAGGGCTCA TTTACCGGCG CAATCAGTGC CCGTAAGGGA
CGCTTCGAGC TCGCCGAAGG GGGCACCCTG TTTCTCGATG AGATAGGCGA TATGCCCCTG
CAGATGCAGG TGAAACTGCT GCGTGTATTG CAGGAGCGCG TCTTCGAGCG TGTCGGTGGC
AGCAAACCGA TTCATACCAA TGTGCGCGTC ATCGCGGCAA CCCACAGAGA GCTAGAGACC
ATGATCGCCA ACGGCGAGTT TAGGGAAGAT CTCTTCTATC GCCTCAATGT GTTTCCTGTC
GAGATGCCCG CCCTGTGTGA GCGCAAAGAC GATATCCCGC TTTTGCTGCA GGAGTTGGTC
AGCCGCGTTT ATAACGAGGG GCGTGGCAAG GTGCGTTTTA CCCAGCGTGC GATTGAGTCA
CTCAAGGAGC ATAGCTGGTC GGGTAACGTG CGTGAACTCT CTAACCTGGT CGAGCGTCTG
ACGATCCTTT ATCCGGGTGG CTTGGTCGAC GTTAATGACC TGCCGCTTAA ATACCGCCAT
ATTGATGTGC CTGAATATCA GGTGCAGGTC AGTGAAGAGG AGTTGGAACG CGATGCGCTG
GCCTCTATCT TCAGCGATGA GGTAGCGGTC GATATTCCCG AGAGCCGTTT CCCCAGCGAG
TTGCCACCCG AAGGAGTGAA CCTTAAGGAT CTATTGGCCG AGCTTGAGAT CGATATGATT
CGCCAGGCAC TGGATCAACA AGACAATGTG GTGGCCCGCG CCGCAGAAAT GCTTGGCATT
CGCCGTACCA CACTGGTTGA GAAGATGCGC AAGTATGGCA TGAGTAAAGA TTAA
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| Protein sequence | MMQTDQRILL VGNQSERINR LSCVFEFLGE QVELLAVDRL ESRMSNTRYR ALVIAQEAQS
KTLLQSIATS MPWQPILLLG SNGDVTAGNV LGCIEEPLNY PQLTELLHFC QVFVQAKRPD
IPTSGNQTKL FRSLVGRSEG IAQVRHLINQ VAGSDATVLV LGQSGTGKEV VARNIHYISD
RRDGPFIPVN CGAIPPELLE SELFGHEKGS FTGAISARKG RFELAEGGTL FLDEIGDMPL
QMQVKLLRVL QERVFERVGG SKPIHTNVRV IAATHRELET MIANGEFRED LFYRLNVFPV
EMPALCERKD DIPLLLQELV SRVYNEGRGK VRFTQRAIES LKEHSWSGNV RELSNLVERL
TILYPGGLVD VNDLPLKYRH IDVPEYQVQV SEEELERDAL ASIFSDEVAV DIPESRFPSE
LPPEGVNLKD LLAELEIDMI RQALDQQDNV VARAAEMLGI RRTTLVEKMR KYGMSKD
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