Gene Shew_1361 details

Gene Information

• Locus tag: Shew_1361
• Symbol: fliS
• ID: 4921868
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella loihica PV-4
• Kingdom: Bacteria
• Replicon accession: NC_009092
• Strand: +
• Start bp: 1569761
• End bp: 1570171
• Gene Length: 411 bp
• Protein Length: 136 aa
• Translation table: 11
• GC content: 47%
• IMG OID: 640162902
• Product: flagellar protein FliS
• Protein accession: YP_001093489
• Protein GI: 127512292
• COG category: [N] Cell motility; [O] Posttranslational modification, protein turnover, chaperones; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG1516] Flagellin-specific chaperone FliS
• TIGRFAM ID: [TIGR00208] flagellar biosynthetic protein FliS

Plasmid Coverage information

• Num covering plasmid clones: 26
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 12
• Fosmid unclonability p-value: 0.997473
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGAGAAAGT CACTGCAGTC ATATCGAAAG GTGTCATTAG AGAGCGAGAT CTCAGTCGCC 
TCTCCACACC GAATTATCCA AATGATGTTT GAAGGTGCGC TGCAACGACT AGCCCAGAGT 
CGTTATGCAA TAGAAAACAA CGATATAGAA AATAAAGGTA TCTATATCGG CAAGGCAATC 
GGCATCATCA CAGGGCTTAA CAACAGCCTG AATATGGAAG CGGGTGGCGA GATCGCCAGC 
AACCTTAGCG ACCTCTATGA TTTCATGCTG CGTAAGCTCT CTGAGGCCAA CATGAATAAC 
GATGTGCAGG CGATCGATGA TGTGAGTGAA ATCATCCGTA CCATCAAGGA AGGGTGGGAC 
GCCATTCCCC AAAATGAGCA CCATCTAGCG TCACACACAG AGGCAATTTA A 

 

Protein sequence

MRKSLQSYRK VSLESEISVA SPHRIIQMMF EGALQRLAQS RYAIENNDIE NKGIYIGKAI 
GIITGLNNSL NMEAGGEIAS NLSDLYDFML RKLSEANMNN DVQAIDDVSE IIRTIKEGWD 
AIPQNEHHLA SHTEAI