| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1322 |
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| Symbol | |
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| ID | 4920523 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 1535609 |
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| End bp | 1536337 |
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| Gene Length | 729 bp |
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| Protein Length | 242 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640162862 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_001093450 |
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| Protein GI | 127512253 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 36 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAAACATA TCATTGTGAC GGGTGGCAGC AGAGGCCTAG GTTTGGCCAT AGTGACTCAC
CTTTTAGCGC AAGGCTATAA AGTCTCAACC TGTAGCCGAG CAACAACGTC AACCATAGAG
GCACTGGAAC AGAGTAATCC AAACTTTAAA TGGTTTCCCT GTGAAATTGG AAACGCAGAG
CAAACATCGC AATTTGTTAA AGAGGCCTGC ATCTGGGCTA ATGAATCGCC TCTTTGGGGG
CTGATCAACA ATGCGGGGAT CGCCAAAGAA GGTGTACTAG CGACGTTTCC CAACATTGAG
TCTGACGCAC TGATACAAGT AAACCTAAAC GGGGCGCTCT ATACAGCCCG GGAAGTGCTA
CGTGTATTCT TACGCCAGAA TAGTGCCGGT AGAATCATCA ATATTAGCTC GATAATTGGC
AGTCGAGGCT ACACGGGGCT CGCCGCCTAC TCTGCCTCAA AGGCAGGTTT AGACGGCCTA
ACTAGAGCAC TGGCAAGAGA GAACGGACGT CGAAACATTA CTGTCAACTC CATAGCACCT
GGCTACCTGG ATACTGAGAT GTCATCAACG CTCTCAGATA AGAAACGAGA CCAGATTATA
CGCCGCACTC CAATGCATAG GTTAGGTAAG GTCGACGATA TCACTCCAGC GATCAGCTTT
TTGTTATCCG ATGGGGCCGC CTTTATTACC GGGCAAACAC TCACCATTGA TGGCGGAATC
ACTAACTAG
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| Protein sequence | MKHIIVTGGS RGLGLAIVTH LLAQGYKVST CSRATTSTIE ALEQSNPNFK WFPCEIGNAE
QTSQFVKEAC IWANESPLWG LINNAGIAKE GVLATFPNIE SDALIQVNLN GALYTAREVL
RVFLRQNSAG RIINISSIIG SRGYTGLAAY SASKAGLDGL TRALARENGR RNITVNSIAP
GYLDTEMSST LSDKKRDQII RRTPMHRLGK VDDITPAISF LLSDGAAFIT GQTLTIDGGI
TN
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