Gene Shew_1320 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_1320 
Symbol 
ID4920514 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp1533202 
End bp1534407 
Gene Length1206 bp 
Protein Length401 aa 
Translation table11 
GC content43% 
IMG OID640162860 
Productmethyltransferase type 12 
Protein accessionYP_001093448 
Protein GI127512251 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACAATCA ATCAAGAACA CCTGACTGAC TGTAAACTGT GCAAAGCGCA TTCGTGGGAG 
CTAGTAGCGA CCTTAATTTC CGGCATTTGG GATAAACGCC ATGATGAGCT AAACAGGGAA
GAGTTACGTT TCCCTATTGG CCAATGTACC AAGTGCCATC ATGTTCAGGT TGCAATCCCC
TACACTCAGA GTATCTTCGA TTCCCTCTAT TTTTCTAACC AAGCCGAACC CGACATGTGG
TGCGAAACGC CAAATGGTCA AAAATCTCCC TATGAAGAGA TGCTCGAATT TATTGCTCCT
TATATTCAAG ATGGCGCGCA TATCGTAGAT TTTGGTGCGG GTGCAGGAAC CACATTAAAG
CATATTGAAA ATACCCATAA AGAAAGGCAA CTCACCCTAG CCAGTGTAGA TTTTCACAAT
CATATTCAAT CAGAAACCAT CGAATACCTG AGTGCAGATC TTAATAAACT TGAGGCACTG
CAAGCTGAAT TTGTCACCCA GCCAATCTCT TTGGCGATTA GCACTCATGT GTTGGAACAC
CTAATTGATC CCATTCACTT TCTGACGCAG ATAAGATCAA TGTTAAGCGA TGACGGGCAT
ATTTTTATCG AAGTGCCTGA TTGCAGCCCA GATGCCTTCA TTGAACATCT GGCCTTTACC
AATCTAGTTC ATGGGCAACA TATTCACTAT TACAGCAAAG ACTCATTAGC CCAAATAGCC
CGCTTGGCAG GCCTAAAGAT TGACGCTTTA CAGCAACTGA CAACTGGTGA TATTCCACGG
CTATTAATAC TGCTGAGTAA GACGACGCAA GAAAGTTCTA CCACAGTCCT TCCCGTGACC
TCGGGGGCCG ATGTCGCTGT GGTCAAGCGT TTTAACGATT ATCATGCCTT TCAGGATTCG
TTGTTTAAGC AGATACAGCA AGCATTGATG TTAAATGACA CTATTGGCAT ATGGGGCATA
GGAGGTGATT TTTACCAATT AACCCAGAGC TATCCCGAGC TTATCGACTT GATACAAGCT
AATAGCATCA TTCTTTATGA CTATGAGCTG GCTGGACATA CCTATGTTGG TTCATCTATT
CGATGCAGTT CGGCAATCGC CTCAACAAGG TATCCGGTTT TCATGTTGCC TTTATATGCA
CCAACCAGAG AAAAAATGCA TCAGGTTTCT CAAAGTTGGT CGGCACAAGT TATCGATCCC
TTTTAA
 
Protein sequence
MTINQEHLTD CKLCKAHSWE LVATLISGIW DKRHDELNRE ELRFPIGQCT KCHHVQVAIP 
YTQSIFDSLY FSNQAEPDMW CETPNGQKSP YEEMLEFIAP YIQDGAHIVD FGAGAGTTLK
HIENTHKERQ LTLASVDFHN HIQSETIEYL SADLNKLEAL QAEFVTQPIS LAISTHVLEH
LIDPIHFLTQ IRSMLSDDGH IFIEVPDCSP DAFIEHLAFT NLVHGQHIHY YSKDSLAQIA
RLAGLKIDAL QQLTTGDIPR LLILLSKTTQ ESSTTVLPVT SGADVAVVKR FNDYHAFQDS
LFKQIQQALM LNDTIGIWGI GGDFYQLTQS YPELIDLIQA NSIILYDYEL AGHTYVGSSI
RCSSAIASTR YPVFMLPLYA PTREKMHQVS QSWSAQVIDP F