| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1319 |
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| Symbol | |
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| ID | 4920505 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 1532052 |
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| End bp | 1533218 |
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| Gene Length | 1167 bp |
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| Protein Length | 388 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640162859 |
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| Product | DegT/DnrJ/EryC1/StrS aminotransferase |
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| Protein accession | YP_001093447 |
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| Protein GI | 127512250 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0399] Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis |
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| TIGRFAM ID | [TIGR03588] UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.580397 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATTCCTT ATGGTCGCCA AGATATTTCG TCATCGGATC TCGAAACCTT GAAGCAGGTG
CTGCTCAGCG ACTTTTTAAC TCAGGGTCCC CAGGTTCCAT TATTTGAAAG TAATATCTGT
AAGGCGACTG ATGCGTCCTT TGCGGTAGCA GGAAACAGCG CAACCTCTAT GTTGCATCTT
GCATGTTTGG CTTTAGGCGT CAAAGAGGGA GATCTTGTCT GGACAAGCCC CATTACCTTC
GTCGCTTCGG CAAACTGTGC TCGTTACTGC GGAGCAGATG TTGACTTTAT TGATGTGGAT
GCCCATACCG CCAATTTGAG TATTGATGCA TTAGCGATGA AGTTGGTTGC TGCAGAAAAG
GCTGGTCGAT TGCCTAAGGT GATAATCCCC GTACATATGG CTGGCCATAG CTGCGATATG
CAGGCCCTAT CTGAGCTGGT AAGGCCATAT GGCATTAAGA TCATAGAAGA TGCAGCTCAC
GCTATTGGAG GTCGTTACCA AGGACGTCCT ATAGGTTGCT GTGAATATAG TGATATATGT
GTTTTCAGTT TTCATCCTGT GAAAATTATC ACTACTGGCG AAGGCGGAGT GGCGACTACA
AATGACCCTG CATTGGCAAA AACTATTGCT AGTCTTCGCA GTCATGGAAT CTCTAAATTA
CCTCAAGAGT TGACTAGGCC TGAAGAGGGA GACTGGTACT ATGAACAGGA TACACTGGGT
TTTAATTATC GTATGACAGA TTTACAAGCA GGATTAGGCA ATAGCCAGAT CCAGCGATTG
CAGGAATTTG TCAAACGACG TAATGAGCTA GTGCAGCGAT ATCATCTCTT CCTGTCTGCA
TTAGATATTG AGTTTATTCG GCCGAGTGAG CAGTGTTTGA GTGCTTATCA TCTCTTCATC
ATTCGCTTGC CAAAAGAGCT TGATCGAAAG TTAGTATTTA ATGCCATGAG AGCCGCCGGG
ATTGGCGTGC ATGTGCATTA TATCCCTGTA TATCTACAGC CTTATTATAC GGGCTTAGGT
TTCAACCAAG GCCACTGTCC CGAGGCCGAA TCTTATTATG CTAGCTGTTT AACTTTACCT
TTGTATCCGA CATTAACCGA CTCAGAGCAG GACTATGTTA TTGAAACTTT GGCCGCTGTG
CTCGATAAGG TTAAAAGGGA TCGATAA
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| Protein sequence | MIPYGRQDIS SSDLETLKQV LLSDFLTQGP QVPLFESNIC KATDASFAVA GNSATSMLHL
ACLALGVKEG DLVWTSPITF VASANCARYC GADVDFIDVD AHTANLSIDA LAMKLVAAEK
AGRLPKVIIP VHMAGHSCDM QALSELVRPY GIKIIEDAAH AIGGRYQGRP IGCCEYSDIC
VFSFHPVKII TTGEGGVATT NDPALAKTIA SLRSHGISKL PQELTRPEEG DWYYEQDTLG
FNYRMTDLQA GLGNSQIQRL QEFVKRRNEL VQRYHLFLSA LDIEFIRPSE QCLSAYHLFI
IRLPKELDRK LVFNAMRAAG IGVHVHYIPV YLQPYYTGLG FNQGHCPEAE SYYASCLTLP
LYPTLTDSEQ DYVIETLAAV LDKVKRDR
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