| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1318 |
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| Symbol | |
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| ID | 4920500 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 1531054 |
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| End bp | 1532052 |
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| Gene Length | 999 bp |
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| Protein Length | 332 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640162858 |
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| Product | polysaccharide biosynthesis protein CapD |
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| Protein accession | YP_001093446 |
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| Protein GI | 127512249 |
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| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1086] Predicted nucleoside-diphosphate sugar epimerases |
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| TIGRFAM ID | [TIGR03589] UDP-N-acetylglucosamine 4,6-dehydratase |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.914837 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGTTTAACA ATAAATCGAT CCTGATAACT GGCGGTACGG GCTCCTTTGG CCAGAAATAT
ACTAAGACGA TTTTAGAGAG ATACAGTCCA AAGCGATTGA TCATCTTATC GCGAGATGAA
CTCAAGCAGT ATGAGATGCA GCAAATTTAT AATGCGCCTT GTATGCGATA TTTTTTGGGG
GATGTCCGTG ATGGTGACCG TATGATGCAA GCCTTTAAGG ATGTGGATTA CGTGATTCAT
GCCGCGGCCA TCAAGCAAGT GCCTGCCGCA GAATATAACC CCATGGAGTG TATCAAAACC
AACATTCATG GTGCTGAAAA TGTGATTAAG GCTGCAATCG CTAACAAGGT AAAGAAAGTG
ATCGCCTTAT CGACCGATAA GGCAGCAAAT CCCATTAACC TCTATGGTGC AACCAAATTA
GCGTCAGACA AACTGTTTGT GGCCGGGAAC AACATTGTTG GCGATGGCGA GACACGCTTT
TCTGCGGTGA GATATGGCAA TGTAGTCGGC TCGCGGGGAT CTGTGGTTCC TTTTTTTCAG
AAGTTAATTA AGGAAGGGGC TCAGTCTTTA CCCATTACTC ACCCTGACAT GACACGTTTC
TGGATCACCT TACAAGATGG TGTAGATTTT GTTCTGAAGA ACTTTTCACG TATGCAGGGG
GGGGAGATAT TTGTCCCCAA AATTCCATCG GTTCGAATAA CGGATCTCGC TCAGGCATAT
GGCCCAGGGT TGAGCCACGA TATTGTTGGC ATCAGGCCCG GCGAAAAAAT GCATGAAATC
ATGTGCCCTG CAGATGATTC CCACCACACC ATTGAGTTTG ACGATCATTT TGTGATCACG
CCGAGTATCT CCTTTTTCGG TCGGGAGCAT GATTATTCGT TAAACCAATT GGGTGAGAAA
GGGAGTTTGG TTGAGCAAGG TTTTGAATAT CATTCGGGTA ATAATCCACA TTTTCTTACC
GTAGATGAGA TTAAGCTATT AGACGGAGAT AAGGCCTAA
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| Protein sequence | MFNNKSILIT GGTGSFGQKY TKTILERYSP KRLIILSRDE LKQYEMQQIY NAPCMRYFLG
DVRDGDRMMQ AFKDVDYVIH AAAIKQVPAA EYNPMECIKT NIHGAENVIK AAIANKVKKV
IALSTDKAAN PINLYGATKL ASDKLFVAGN NIVGDGETRF SAVRYGNVVG SRGSVVPFFQ
KLIKEGAQSL PITHPDMTRF WITLQDGVDF VLKNFSRMQG GEIFVPKIPS VRITDLAQAY
GPGLSHDIVG IRPGEKMHEI MCPADDSHHT IEFDDHFVIT PSISFFGREH DYSLNQLGEK
GSLVEQGFEY HSGNNPHFLT VDEIKLLDGD KA
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