Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_1317 |
Symbol | |
ID | 4920495 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | - |
Start bp | 1528142 |
End bp | 1530622 |
Gene Length | 2481 bp |
Protein Length | 826 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 640162857 |
Product | TPR repeat-containing protein |
Protein accession | YP_001093445 |
Protein GI | 127512248 |
COG category | [S] Function unknown |
COG ID | [COG2604] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAGAACA CCCAATCAGA AATATCCAAA ACGTTTGCAA TCAGTCAGTT CAATGAGTAC TACTTACCCA GTGTAAATAG ACATACCTTT GAAAAGCTGG ACTCCGCTTC TCTTTACAAC AAGAAATATC AGGACGCTTT TAAGCAAGAA GATACACTGC ACATCATCAT AGGCATGGAT TCTGGCCTAC TGGCAAACTA TCTCATGTCG CAACCACAGG CAAAAGGCAG CAAATATCTG TTCGTCGAGC TGGCTGACGT ACTTTCTCTG CTAACCATAG AGATTCCTGA ACACCTCAAA GATGACATGC AAATCGTTTC AGCGAATGAT TTTCAAGAGG CAATAACGGC CCATGACAAC AATCTCTACA TAGTTAAGAA ACAATTCAAA ATTCACCGTT CCATTGCCGT AGAAGGCAAC TATCTCGATG CATATTGCGC ATTGAATGAA CTAGTAGAAA CGAGTGTCGA TCACGAGTAT TTTGAGCAAA GCATTGGTTT CACACAAAAA ATATTCATCA AGGCACAATT TAAAAACCTC GCTGAAAATC AAAAGCCTGT ATCAATACTC AAACAAGCCT TTCGCGATAA AACCTGTATA GTGTTAGGGG GAGGTCCATC CCTAGACGAA CATTTAGAAT GGATTAAGCA AAACAACGAC GACCTAGTCA TCATCGCCGC ATCGCGAGTC GTAGGCAAAC TGGTCAAACA AGAGATCTCT GTCGACATAG TTGTCTCCGT CGATCCGCAA ACCCACAGCT TTGATGTCAA TAAAGAGTTT ATGCAGTTGG AGCATAAGAG TTTATTGATC AACTCTTACC ATGTGGTGCC ACAAATTTTA GGTCAATGGC AAGGTAGCTC TCTATATACG GGCAATCACC TTCCATGGCT GCACGAGAGA GATAACCACA ACATAAGATC CATTGGGCCA ACAGTTACCA ACAGCGCCAT AGAGATCGCC ACGGAAATGG GCTTTAGCCA GGTACTGCTT TGCGGTGTAG ATTTCTGTCA TTCCCAGACA GGTGTCACCC ATGCTCAAGG GACATATGGC GCCAGTCTGG GGCCTAACAT AGGAGTCATG TTCGAATGGG TTGAAACAAA TGCCGGCGAC ATGGCTGAAA CACCAATTCA ATTGCTACAC GCCATTACCT CCCTTGAAGA GGCAATTAGC AATACCCCAG ATACCCAATA CATCAACTTA TCTCTTGATG CGGCGAAAGT TAAAGGGGTC AACTATCTCG CTACCGACCA AATCGAGATC CAGCCACTAA CCACAAGCCA ACGCGCTCTA CTTTTACCGC AAAAGCACTG CACTACAACA AGCGAAAAGC AGCGCTATCT AGAAGACACC TTAACGGAAA CTGAATCTCA CCTAGAGAAA CTCACCTTGC TTAATGCTGA ATTAAAACAG GCTCATAGCA TCATAGACAA ACTGGAGATT GCCAAGTCGC CTGAGCGTAT AGCGATTCAA GCGGAGAAGC TCGAAAAACT CGAACAGAGA ATCAATGAAA AATACCCAGA TCTAGCCAAC CTCATCAAAT TCTATGGCTA CTATGAATTT TCACATTTCT TCTCTACCAA AAAAGAGCAG GACTGGTCCC AGGAAGATGT CAACAAACAT ACCCGAATCT ACTACTCGGC ATTTGAGAGC ATTGCCCAAG AGATAGCGCG GCTAATTGAT GATGCCATCA TACGCCTCCA CTCAAGACTC GAAGAGGAAA AACCAGACTG CGACATAAGT GCCTTATGTC AGCAATGGCA CAATGATATG CAGTGGGGAC GAGCTATTAT CTGGCAACAG CAACACCCCC AAGCTTATGA GGCCTTGTCG GCTGAGCAAA AATCGCTTCT TAAGAAGAGT GAAGAGATCT ATCTTGAACA GTTTGTCGTT AAAGAGTTTA TCGATGATAC AGATGACGCC CCCGTCCCCT TTATCGAAAA CGCCTTTAAG AAATTACAGA TATTACTGCA CAACAAGCAT CTGCTGGGTA TCTCCAAAAT TGCACAATAC ACGGCGCCTT TTATTCAAAC TGATCCCGAG GTTAATCGCC TGCATTTTCT CGCTTTAAGC TATCAATACA TGCTGGAAAA CCAACCCGAG TTGGCACTAG AAACGCTACA GAAGATCCCT GAGAATGATT TTCAAGAGGC CGAGCGTAAA CTCGCCATCC AGCTGACTCT GAATCTCAAT AACCTCCCGC TGGCCCTAGA GCATTACGCC AAGATAATTG AGTACAGCGA CGAGTATCTG CCTCAGTATG CCCATGCGCT GAACTTGAGT GGCGATCCGC AGGCCGCCCT GGGTGTCTAC CTCGATTACT TGGATAAATA TCCTCAGGAC ATTCCTGTGA TGCTAAAATT GGGGATCTTT CTGGCCCAAG CGGGTCAGAT TGACGGCGCC ATCTCCTGTT TCGAAAACGT CCTCATGCTG GATGAAGATA ATCAGGCGGC GCTCAACTAC CTGGGGCAGC TCAGGCCCTA A
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Protein sequence | MQNTQSEISK TFAISQFNEY YLPSVNRHTF EKLDSASLYN KKYQDAFKQE DTLHIIIGMD SGLLANYLMS QPQAKGSKYL FVELADVLSL LTIEIPEHLK DDMQIVSAND FQEAITAHDN NLYIVKKQFK IHRSIAVEGN YLDAYCALNE LVETSVDHEY FEQSIGFTQK IFIKAQFKNL AENQKPVSIL KQAFRDKTCI VLGGGPSLDE HLEWIKQNND DLVIIAASRV VGKLVKQEIS VDIVVSVDPQ THSFDVNKEF MQLEHKSLLI NSYHVVPQIL GQWQGSSLYT GNHLPWLHER DNHNIRSIGP TVTNSAIEIA TEMGFSQVLL CGVDFCHSQT GVTHAQGTYG ASLGPNIGVM FEWVETNAGD MAETPIQLLH AITSLEEAIS NTPDTQYINL SLDAAKVKGV NYLATDQIEI QPLTTSQRAL LLPQKHCTTT SEKQRYLEDT LTETESHLEK LTLLNAELKQ AHSIIDKLEI AKSPERIAIQ AEKLEKLEQR INEKYPDLAN LIKFYGYYEF SHFFSTKKEQ DWSQEDVNKH TRIYYSAFES IAQEIARLID DAIIRLHSRL EEEKPDCDIS ALCQQWHNDM QWGRAIIWQQ QHPQAYEALS AEQKSLLKKS EEIYLEQFVV KEFIDDTDDA PVPFIENAFK KLQILLHNKH LLGISKIAQY TAPFIQTDPE VNRLHFLALS YQYMLENQPE LALETLQKIP ENDFQEAERK LAIQLTLNLN NLPLALEHYA KIIEYSDEYL PQYAHALNLS GDPQAALGVY LDYLDKYPQD IPVMLKLGIF LAQAGQIDGA ISCFENVLML DEDNQAALNY LGQLRP
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