| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1293 |
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| Symbol | |
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| ID | 4920497 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 1493389 |
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| End bp | 1494576 |
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| Gene Length | 1188 bp |
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| Protein Length | 395 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 640162834 |
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| Product | outer membrane protein assembly complex subunit YfgL |
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| Protein accession | YP_001093422 |
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| Protein GI | 127512225 |
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| COG category | [S] Function unknown |
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| COG ID | [COG1520] FOG: WD40-like repeat |
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| TIGRFAM ID | [TIGR03300] outer membrane assembly lipoprotein YfgL |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.664438 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGTCTT GGTGCAAAAC ATTACTGGCT TGCAGCTTGA GCCTGGGGTT GTTGTCGGCC
TGTTCTTCTA ACGATGTTGA GGAAGAGCCG GTAAGTCCGC TGCCGCAGAT TGAGGCGAGC
GTCTTCCCCG AGGTCAGCTG GAGTGCTTCC GTCGGCAGTG GTGTGGGTGA CTACTACTCT
AAGATCCGTC CGGCGGTGCG TTACGGCAAG CTGTTCGTCA TGGATCGTTA CGGTGAAGTC
GCCGCCTACG ATGAAGCCAC AGGTGAGCAG GTCTGGTCGC TGGAGATCAG CTCCTGGTTC
AAAGAGGGCG CCTTGTCTAA GAACAAGGGC GCGCGTCTCT CCTCAGGCAT TACCGCTGCC
CGTAACAAGG TGTTCTTCGG TGGTGAGAGT GGCCTGCTGG GCGCCGTCGA TGCCGAAACC
GGCGAGATGG TCTGGCATGT GACCGCGGGC GGTGAGCTGC TGTCGGCGCC AACTGTAGGC
GAAGATGTAG TGGTGGTTCA CACCAGCACG GGCGCTCTGG AAGCCTATAA CGTCGATGAC
GGCAAACAGC TGTGGGTCTA CGAGAGCAAG TTGCCAACCC TGACCCTAAG GGGCACAGGT
TCTGCTGCCT ATGAGGCCGG AGGTTTCTTC GTCGGCACCG CCGATGGCAA GGTCGCGGTT
GTGGTGAAAA GCAACGGTCA GGCCGCCTGG GAGCAGCCTA TCTATACGCC AAAGGGGGGT
AACGAGTTTA CCCGCATGGC CGACGTGGAT ATGAAGCCGC TTATCGTGGG CGAGAACATC
TACGCGGTGA GCTACAACGG TAACCTGGTC TCCATGGAGC TGCGTACAGG CCGTGTGGTC
TGGAGTCGTA AATATTCTAG CTTCAACGAG TTGGCCTCGG CCGGTCTGAA CCTTTACCTG
GTCGATGACC ACGGCCGTGT GTATGCGGTC GATAAGCGTA ACGGACTTGA AAGCTGGAGC
AACAGCGAGC TGACTAACCG CGAATTGACC TCACCAGTGG TCTTCAAAGA CTACCTGGTG
GTGGGTGATT TCGAAGGCTA TCTGCATTTC ATCGATCGCG CCTCAGGCAA GCTGGTGGGC
CGCGTCGAAG TGGATAGTTC AGGTTTATTT AGCCAGCCAC TGGTAATAGA TGATAAGATC
TACGTCCAGA GTCGCGGCGG CAAGGTAGCA AGAATTACGC TTCCCTAA
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| Protein sequence | MKSWCKTLLA CSLSLGLLSA CSSNDVEEEP VSPLPQIEAS VFPEVSWSAS VGSGVGDYYS
KIRPAVRYGK LFVMDRYGEV AAYDEATGEQ VWSLEISSWF KEGALSKNKG ARLSSGITAA
RNKVFFGGES GLLGAVDAET GEMVWHVTAG GELLSAPTVG EDVVVVHTST GALEAYNVDD
GKQLWVYESK LPTLTLRGTG SAAYEAGGFF VGTADGKVAV VVKSNGQAAW EQPIYTPKGG
NEFTRMADVD MKPLIVGENI YAVSYNGNLV SMELRTGRVV WSRKYSSFNE LASAGLNLYL
VDDHGRVYAV DKRNGLESWS NSELTNRELT SPVVFKDYLV VGDFEGYLHF IDRASGKLVG
RVEVDSSGLF SQPLVIDDKI YVQSRGGKVA RITLP
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