Gene Shew_1292 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_1292 
Symbol 
ID4923911 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand+ 
Start bp1492754 
End bp1493377 
Gene Length624 bp 
Protein Length207 aa 
Translation table11 
GC content54% 
IMG OID640162833 
Producttetratricopeptide TPR_4 
Protein accessionYP_001093421 
Protein GI127512224 
COG category[S] Function unknown 
COG ID[COG2976] Uncharacterized protein conserved in bacteria 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.0753311 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGGAAATTT ATAGCACAGA AGAACAACAA GTCGATGCTA TCAAACAGTT CTGGAAAGAC 
TATGGCAACT CGATTGTCAT AGGTGCAGTG GTAGGCCTGG GTGGCCTTTA CAGCTGGAAC 
TACTATTCAG ATTACAAGGT GGCTCAGGCC GAAGAAGCTT CTGAAGCCTT CCAAACTATC 
AGCAACTCGG TCAAAGCCGA TTCGAGCATG CTGGCGGCCG CCGAGAGCTT TGCTAAAGAC 
CACGACGGTC AGCAGGGCTA TCAGGCACTA CTACAACTTA TCGTGGCCAA GGCCGCGGTA 
GAAGCCGGTG AGCTGGACAA GGCAGAGCAG GCCCTTAAGC AGATCCTGGT CAGCAAGCCT 
GAAGAAGGTC TGGTTGCGGT TGCGACCTTG CGTCTTGCCC GCGTGCAGGC AGAGCAAGGT 
CAGCTGGCAA CGGCACTGGC GACTCTGGAG CAGCTTAACA CGCCTTCGTT TGCCGTACAG 
CGTGATGAGT TAAAAGGTGA TTTCCTGGTA CGCCAAGGCG ATGCCGACAA GGCAAAGAGC 
GCCTATCAGT CAGCCCTGGA CAATGGCGGA GCAACTTCAA GCCCAGCCTT ACAGATGAAG 
CTAGATAACC TGAACAAGGC ATAA
 
Protein sequence
MEIYSTEEQQ VDAIKQFWKD YGNSIVIGAV VGLGGLYSWN YYSDYKVAQA EEASEAFQTI 
SNSVKADSSM LAAAESFAKD HDGQQGYQAL LQLIVAKAAV EAGELDKAEQ ALKQILVSKP 
EEGLVAVATL RLARVQAEQG QLATALATLE QLNTPSFAVQ RDELKGDFLV RQGDADKAKS 
AYQSALDNGG ATSSPALQMK LDNLNKA