| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1290 |
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| Symbol | ispG |
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| ID | 4920548 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 1490199 |
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| End bp | 1491314 |
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| Gene Length | 1116 bp |
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| Protein Length | 371 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 640162831 |
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| Product | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase |
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| Protein accession | YP_001093419 |
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| Protein GI | 127512222 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG0821] Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis |
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| TIGRFAM ID | [TIGR00612] 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.920527 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGTACAACG AGTCCCCAAT CATTCGCCGC CCTTCGACAC GCATCTATGT GGGCGATGTG
CCCATCGGTG ATGGCGCGCC AATTGCCGTG CAATCTATGA CCAACACCCG CACCACAGAT
GTTGAGGCCA CGGTGGCTCA GATCCGCGCG CTGGAAAATG TCGGCGCCGA TATCGTACGC
GTCTCTGTGC CTACCATGGA TGCCGCCGAG GCGTTCAAGG TGATCAAGCA GCAGACTAAG
GTCCCGCTGG TTGCCGATAT CCATTTCGAT TACCGTATCG CCCTGAAAGT GGCGGAATAC
GGCGTGGATT GTCTGCGTAT CAACCCGGGT AACATAGGCA ACGAAGAGCG CATCCGCAGC
GTGGTGGAGT GTGCTCGCGA CAAGAATATT CCGATCCGTA TCGGCGTTAA CGGCGGTTCA
TTAGAGAAAG ATCTGATGGA CAAGTACAAG GAGCCGACGC CGCAGGCCTT GCTGGAATCG
GCCATGCGCC ATGTGGATAT TCTCGACCGA CTCAATTTCG ATCAGTTTAA GGTGAGCGTG
AAGGCGTCAG ACGTCTTCTT GGCGGTGGAG TCCTATCGTC TGCTGGCCAA ACAGATCAAA
CAGCCGCTGC ACCTTGGGAT CACCGAGGCC GGTGGCGCCC GCGCCGGCGC CGTGAAGTCG
GCCGTTGGCC TTGGCATGTT GCTGGCCGAA GGGATTGGCG ACACCCTGCG TATCTCGCTG
GCTGCCGATC CCGTTGAGGA GATCAAGGTT GGTTTCGACA TCCTCAAATC CCTGCGTATT
CGCTCGCGCG GCATCAACTT CATCGCCTGC CCATCTTGCT CGCGTCAGGA GTTCGATGTG
ATAGCCACGG TGAACGAACT TGAGCGTCGC CTGGAAGATG TGGTGACTCC TATGGATGTC
TCCATCATAG GTTGTGTGGT CAATGGTCCG GGTGAAGCCC TGGTATCGGA TATTGGCCTG
ACAGGTGGTA ACCGTAAGAG CGGTTACTAT GATGATGGCG TGCGCCAGAA GGAGCGTTTC
GACAACGAGC ATATCGTAGA TCAGCTCGAG GCGAAGATCC GCGCCAAGGT CGCCAGCGTC
GACGCGCGTA TTCCGACAAC CGATATCACG GAATAA
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| Protein sequence | MYNESPIIRR PSTRIYVGDV PIGDGAPIAV QSMTNTRTTD VEATVAQIRA LENVGADIVR
VSVPTMDAAE AFKVIKQQTK VPLVADIHFD YRIALKVAEY GVDCLRINPG NIGNEERIRS
VVECARDKNI PIRIGVNGGS LEKDLMDKYK EPTPQALLES AMRHVDILDR LNFDQFKVSV
KASDVFLAVE SYRLLAKQIK QPLHLGITEA GGARAGAVKS AVGLGMLLAE GIGDTLRISL
AADPVEEIKV GFDILKSLRI RSRGINFIAC PSCSRQEFDV IATVNELERR LEDVVTPMDV
SIIGCVVNGP GEALVSDIGL TGGNRKSGYY DDGVRQKERF DNEHIVDQLE AKIRAKVASV
DARIPTTDIT E
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