Gene Shew_1287 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_1287 
Symbol 
ID4923180 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp1487227 
End bp1488348 
Gene Length1122 bp 
Protein Length373 aa 
Translation table11 
GC content53% 
IMG OID640162828 
Productribosomal RNA large subunit methyltransferase N 
Protein accessionYP_001093416 
Protein GI127512219 
COG category[R] General function prediction only 
COG ID[COG0820] Predicted Fe-S-cluster redox enzyme 
TIGRFAM ID[TIGR00048] radical SAM enzyme, Cfr family 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.900175 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTGAAA AAAAGATCAA TTTATTGGAT CTCGATCGTA AGGGATTGAG AGCGCTATTT 
ACCGAGATGG GTGAAAAGCC TTTCCGTGCC GATCAATTGA TGAAGTGGCT TTACCATTTT
GGCGTCAGTG ATTTCGAACA GATGACCAAC ATCAACAAGG TGTTACGTGC CAAACTGGCC
GCGCGTTGTG AGGTGGTGGC GCCAGAGATC TCCAGCTACC AGAAGTCTGC CGATGGCACC
ATCAAGTTCG CCATCAACGT GGGCAATGGC CAAGAAGTCG AAACCGTCTA CATCCCAGAG
GAGGACCGTG CCACCCTGTG TGTCTCTTCT CAGGTGGGTT GCGCCCTTGA GTGTACCTTC
TGCTCGACCG CCCAGCAGGG CTTTAACCGT AACCTTACCG TGTCTGAGAT TGTTGGTCAG
ATCTGGCGCG TGTCTCACTT CCTCGGTTTC CAGAAAGAGA CCGGCGAGCG TCCTATCTCC
AATGTGGTGA TGATGGGCAT GGGGGAGCCG CTGCTGAACC TGAAAAACGT CATGCCGGCT
ATCGACATCA TGCTGGACGA CTTCGGCTTC AGCCTCTCTA AGCGCCGCGT GACCGTCTCT
ACCTCGGGCG TGGTGCCTGC GCTGGATATC TTGGGTGATA ACCTGGATGT GGCCCTGGCG
GTAAGTATTC ACGCGCCAAA CGATGAGCTG CGTGATGTGC TGGTACCGGT CAACAAGAAG
TATCCGCTGC AGGAGTTCCT GGCGGCGATC CGTCGTTACC TGGCCAAGTC CAACGCCAAC
CGAGGCCGCG TGACCCTGGA ATATGTGATG CTTGATCATA TCAACGACAG CACAGATCAG
GCTCATGAGC TGGCAGAGTT GATGAAGGAT ACCCCTTGTA AGATCAACCT GATCCCTTTT
AACCCTTATC CTGGGTCACC ATATGGGCGT TCATCGAACT CACGTATCGA CAGATTCTCT
AAGGTGCTGA TGGAATATGG TCTGACGGTG ATCGTTCGTA AGACCCGCGG AGACGATATT
GACGCGGCCT GTGGCCAGTT AGCCGGGGAT ATTCGCGACC GAACCAAACG TTTAGCGAAA
AAACGCATGC AAGATAGTCA GATTTCAGTC ACAATAAACT AA
 
Protein sequence
MSEKKINLLD LDRKGLRALF TEMGEKPFRA DQLMKWLYHF GVSDFEQMTN INKVLRAKLA 
ARCEVVAPEI SSYQKSADGT IKFAINVGNG QEVETVYIPE EDRATLCVSS QVGCALECTF
CSTAQQGFNR NLTVSEIVGQ IWRVSHFLGF QKETGERPIS NVVMMGMGEP LLNLKNVMPA
IDIMLDDFGF SLSKRRVTVS TSGVVPALDI LGDNLDVALA VSIHAPNDEL RDVLVPVNKK
YPLQEFLAAI RRYLAKSNAN RGRVTLEYVM LDHINDSTDQ AHELAELMKD TPCKINLIPF
NPYPGSPYGR SSNSRIDRFS KVLMEYGLTV IVRKTRGDDI DAACGQLAGD IRDRTKRLAK
KRMQDSQISV TIN