Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_1287 |
Symbol | |
ID | 4923180 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 1487227 |
End bp | 1488348 |
Gene Length | 1122 bp |
Protein Length | 373 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 640162828 |
Product | ribosomal RNA large subunit methyltransferase N |
Protein accession | YP_001093416 |
Protein GI | 127512219 |
COG category | [R] General function prediction only |
COG ID | [COG0820] Predicted Fe-S-cluster redox enzyme |
TIGRFAM ID | [TIGR00048] radical SAM enzyme, Cfr family |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.900175 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAGTGAAA AAAAGATCAA TTTATTGGAT CTCGATCGTA AGGGATTGAG AGCGCTATTT ACCGAGATGG GTGAAAAGCC TTTCCGTGCC GATCAATTGA TGAAGTGGCT TTACCATTTT GGCGTCAGTG ATTTCGAACA GATGACCAAC ATCAACAAGG TGTTACGTGC CAAACTGGCC GCGCGTTGTG AGGTGGTGGC GCCAGAGATC TCCAGCTACC AGAAGTCTGC CGATGGCACC ATCAAGTTCG CCATCAACGT GGGCAATGGC CAAGAAGTCG AAACCGTCTA CATCCCAGAG GAGGACCGTG CCACCCTGTG TGTCTCTTCT CAGGTGGGTT GCGCCCTTGA GTGTACCTTC TGCTCGACCG CCCAGCAGGG CTTTAACCGT AACCTTACCG TGTCTGAGAT TGTTGGTCAG ATCTGGCGCG TGTCTCACTT CCTCGGTTTC CAGAAAGAGA CCGGCGAGCG TCCTATCTCC AATGTGGTGA TGATGGGCAT GGGGGAGCCG CTGCTGAACC TGAAAAACGT CATGCCGGCT ATCGACATCA TGCTGGACGA CTTCGGCTTC AGCCTCTCTA AGCGCCGCGT GACCGTCTCT ACCTCGGGCG TGGTGCCTGC GCTGGATATC TTGGGTGATA ACCTGGATGT GGCCCTGGCG GTAAGTATTC ACGCGCCAAA CGATGAGCTG CGTGATGTGC TGGTACCGGT CAACAAGAAG TATCCGCTGC AGGAGTTCCT GGCGGCGATC CGTCGTTACC TGGCCAAGTC CAACGCCAAC CGAGGCCGCG TGACCCTGGA ATATGTGATG CTTGATCATA TCAACGACAG CACAGATCAG GCTCATGAGC TGGCAGAGTT GATGAAGGAT ACCCCTTGTA AGATCAACCT GATCCCTTTT AACCCTTATC CTGGGTCACC ATATGGGCGT TCATCGAACT CACGTATCGA CAGATTCTCT AAGGTGCTGA TGGAATATGG TCTGACGGTG ATCGTTCGTA AGACCCGCGG AGACGATATT GACGCGGCCT GTGGCCAGTT AGCCGGGGAT ATTCGCGACC GAACCAAACG TTTAGCGAAA AAACGCATGC AAGATAGTCA GATTTCAGTC ACAATAAACT AA
|
Protein sequence | MSEKKINLLD LDRKGLRALF TEMGEKPFRA DQLMKWLYHF GVSDFEQMTN INKVLRAKLA ARCEVVAPEI SSYQKSADGT IKFAINVGNG QEVETVYIPE EDRATLCVSS QVGCALECTF CSTAQQGFNR NLTVSEIVGQ IWRVSHFLGF QKETGERPIS NVVMMGMGEP LLNLKNVMPA IDIMLDDFGF SLSKRRVTVS TSGVVPALDI LGDNLDVALA VSIHAPNDEL RDVLVPVNKK YPLQEFLAAI RRYLAKSNAN RGRVTLEYVM LDHINDSTDQ AHELAELMKD TPCKINLIPF NPYPGSPYGR SSNSRIDRFS KVLMEYGLTV IVRKTRGDDI DAACGQLAGD IRDRTKRLAK KRMQDSQISV TIN
|
| |