| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1275 |
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| Symbol | |
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| ID | 4920457 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 1474273 |
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| End bp | 1475907 |
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| Gene Length | 1635 bp |
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| Protein Length | 544 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 640162816 |
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| Product | malate synthase |
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| Protein accession | YP_001093404 |
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| Protein GI | 127512207 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG2225] Malate synthase |
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| TIGRFAM ID | [TIGR01344] malate synthase A |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.412232 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTGAAC AGGTAATGAA TAAACATCAG CTAGAGACGG GATTGTCTAT CCTGGGGGCG
CCAGTGCCGG GGCAAGAGAT AGTGCTTAAC GAAGGTGCGC TGAGTTTGCT TGAGGTCTTG
TGTGATCAGT TTGCGGCAGA GGTACCTAAG CTACTCGAGA TGCGCAGGCA GAAGCAGGAA
CTGATTGATA AGGGCTCGCT GCCCGATTTC TTACCCGAGA CCCGTGCCAT CAGAGACGGC
GACTGGCAGA TCCGCGGTAT TCCCCAAGAC CTGCAAGACA GACGCGTAGA GATCACAGGG
CCTGTGGATC GCAAGATGAT CATTAACGCC CTCAATGCCA ACGTTAAAGT CTTTATGGCC
GACTTCGAAG ACTCTCTGGC GCCTAGCTGG ATCAAGGTGA TTCAAGGCCA AATTAATCTG
CGTGATGCCG TGCGCGGCGA GATAGAGTAC ACGGCGCCCG AGACAGGTAA GCATTATACG
CTCGATGATG ATCCTGCCGT GCTTATCGCC CGTGTACGCG GCCTGCACCT TAAAGAGAAG
CATGTCGCCT TCAATGGCGA GGCGATCCCT GGGGCACTGT TTGATTTCTG CCTCTACTTC
TACCACAACT ATCGCCAATT GCTGGAGAAG GGCAGCGGAC CTTACTTCTA TATTCCTAAA
CTCGAGAGTC ATGTCGAGGC GCGCTGGTGG GCCAAGGTGT TTGCCTATGT CGAAGAGCGC
TTCTGTCTAA CGCCGGGCAC CATTAAGTGT ACCTGTCTTA TCGAGACACT ACCGGCGGTG
TTCGAGATGG AGGAGATCCT TTATGAGCTG CGCTCTAACA TAGTCGCGCT CAACTGTGGC
CGCTGGGACT ACATCTTCAG CTACATCAAG ACGTTGAAGA AGCATAGCGA CCGCATCTTG
CCAGACCGTC AGGCGGTTAC CATGGATAAG CCGTTCCTGA GCGCCTATTC GCGTTTGCTT
ATCAAGACCT GTCACAAGCG TGGCGCCCTG GCGATGGGAG GCATGGCTGC CTTCATTCCG
GCTAAGGATC AGGCGCAGAA CGAGGCGGTA CTGGTTAAGG TGCGCGGCGA TAAGGAGCTA
GAGGCGCGTA ATGGCCATGA CGGCACCTGG GTGGCACATC CGGGTCTGGC CGACACCGCT
ATGGGGATCT TCAACGAATA CATAGGTGAA GATCACGTCA ACCAGCTGCA TATCACCCGT
GATGTCGATG CGCCGATTCT GGCCAGGGAT CTCCTGATGC CCTGCGAAGG CGAGCGCACC
GAGTCGGGCA TGCGCCTCAA CATTCGAATT GCGCTGCAAT ATATCGAGGC CTGGATCCGT
GGCAATGGCT GTGTGCCCAT CTACGGCTTG ATGGAAGATG CCGCCACGGC AGAGATCTCA
CGTACCTCTA TCTGGCAGTG GATCCAGCAT GAGCAGAAGC TCTCTAACGG CAAGCTGGTC
ACCAAGGCGC TGTTCAAGGA GATGCTGGTG GAAGAGCTGG CTAACGTCAA ACTCGAGGTG
GGACCGGATC GTTTCACCCA TGGCAGCTTT ACCCAGGCCG CCGTATTGCT GGAAGAGATC
ACCACGGCCG ACGAGTTGGT GGACTTCCTG ACCCTGCCGG GCTACGAGAT TTTGACCCAG
GGCGATAACG CCTAG
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| Protein sequence | MTEQVMNKHQ LETGLSILGA PVPGQEIVLN EGALSLLEVL CDQFAAEVPK LLEMRRQKQE
LIDKGSLPDF LPETRAIRDG DWQIRGIPQD LQDRRVEITG PVDRKMIINA LNANVKVFMA
DFEDSLAPSW IKVIQGQINL RDAVRGEIEY TAPETGKHYT LDDDPAVLIA RVRGLHLKEK
HVAFNGEAIP GALFDFCLYF YHNYRQLLEK GSGPYFYIPK LESHVEARWW AKVFAYVEER
FCLTPGTIKC TCLIETLPAV FEMEEILYEL RSNIVALNCG RWDYIFSYIK TLKKHSDRIL
PDRQAVTMDK PFLSAYSRLL IKTCHKRGAL AMGGMAAFIP AKDQAQNEAV LVKVRGDKEL
EARNGHDGTW VAHPGLADTA MGIFNEYIGE DHVNQLHITR DVDAPILARD LLMPCEGERT
ESGMRLNIRI ALQYIEAWIR GNGCVPIYGL MEDAATAEIS RTSIWQWIQH EQKLSNGKLV
TKALFKEMLV EELANVKLEV GPDRFTHGSF TQAAVLLEEI TTADELVDFL TLPGYEILTQ
GDNA
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