| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1268 |
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| Symbol | smpB |
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| ID | 4922706 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 1467468 |
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| End bp | 1467959 |
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| Gene Length | 492 bp |
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| Protein Length | 163 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640162809 |
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| Product | SsrA-binding protein |
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| Protein accession | YP_001093397 |
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| Protein GI | 127512200 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0691] tmRNA-binding protein |
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| TIGRFAM ID | [TIGR00086] SsrA-binding protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.745549 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.12571 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGCTAAGA AAAACGCAAA AAAATCAAAG AACCCACCGG CGACGATTGC ACGCAATAAA
CGCGCAAACT TCGACTATAA ATTTGAAGAA AAATTTGAAG CCGGCTTATC CCTGATGGGA
TGGGAAGTGA AATCGATCCG AGTCGGAAAG GTAAACCTGT CTGAGAGCTA TGTGTTCCTC
AGAGACGGTG AGGCCTACCT GTTTGGATGC ACCATCACAC CGCTCAATAC CGCATCGACT
CACGTGGTCT GTGACCCCAT GCGCGATCGT AAGCTGCTGC TCAACCGCAG AGAGCTTGAT
AAGCTGCAGG GTTTGGTCGA GCGTCAAGGT TACTCTATCG TGCCTATCTC CATGTATTGG
CGAAAAAATG CCTGGGTGAA GCTCGAAATC GGCCTGGGTA AGGGTAAAAA AGAGCACGAT
AAGCGCGACG ACACCAAAGA GCGCGAGTGG AAGATTGAAA AATCTCGTAC CATGAAACAT
GCCGCACGAT AA
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| Protein sequence | MAKKNAKKSK NPPATIARNK RANFDYKFEE KFEAGLSLMG WEVKSIRVGK VNLSESYVFL
RDGEAYLFGC TITPLNTAST HVVCDPMRDR KLLLNRRELD KLQGLVERQG YSIVPISMYW
RKNAWVKLEI GLGKGKKEHD KRDDTKEREW KIEKSRTMKH AAR
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