Gene Shew_1257 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_1257 
Symbol 
ID4923525 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp1453953 
End bp1454426 
Gene Length474 bp 
Protein Length157 aa 
Translation table11 
GC content53% 
IMG OID640162797 
ProductDNA repair protein RadC 
Protein accessionYP_001093386 
Protein GI127512189 
COG category[L] Replication, recombination and repair 
COG ID[COG2003] DNA repair proteins 
TIGRFAM ID[TIGR00608] DNA repair protein radc 


Plasmid Coverage information

Num covering plasmid clones29 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.502332 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCACAAAG TGATCACCCT ACCCAGCAAC AGCTGGTCAC AAACTTCATC GCAAATCCTC 
GAAACTGCAG CAGGCATAGT GGCTGAGCGT TTCGTTCGTG GTGATGCCTT TTGTAACCCC
GATGCCACCC GCGACTTTCT GCGCTTTAAG CTCCACCAGC ACCAACGTGA AGTATTTGGC
GTGATGATGC TGGATAGCCA GCATCGGCTA ATAGAATTCA ATGAGATGTT TTTCGGCACA
ATTGATGCCG CCAACGTCTA CCCCAGGGAG GTCGTTAAGG CGGTACTGCT ATGTAATGCC
GCTGCGGTGA TCTTGGCCCA TAACCATCCT TCAGGCTGTG CAGAGCCATC AGCGGCCGAC
AGGCGTATCA CCGAGCGGTT AATCAACGCT CTCAGTACCA TAGATGTGCC AGTGCTGGAC
CACATTGTGG TGGGCGACCA ATGTGTGTCG TTTGCGGAGC GCGGTTGGCT CTAA
 
Protein sequence
MHKVITLPSN SWSQTSSQIL ETAAGIVAER FVRGDAFCNP DATRDFLRFK LHQHQREVFG 
VMMLDSQHRL IEFNEMFFGT IDAANVYPRE VVKAVLLCNA AAVILAHNHP SGCAEPSAAD
RRITERLINA LSTIDVPVLD HIVVGDQCVS FAERGWL