Gene Shew_1254 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_1254 
Symbol 
ID4924077 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp1452361 
End bp1452921 
Gene Length561 bp 
Protein Length186 aa 
Translation table11 
GC content50% 
IMG OID640162794 
Productphage integrase family protein 
Protein accessionYP_001093383 
Protein GI127512186 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.709211 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAGAAG TCGAGGCGGT GAAAAGCCGC GATACCATCA AGCTTATCAG TTATCTGCTT 
GAGCGTCACT TTGGTCAGCA GATGGCCGAT GTGTGGAATA TCGGACTCAA CCTGGCGCTG
CGCATCTCCG ATCTACTGGC GATCAAGTTT AGCGATATCC AAGGTGACCG CTTAACCATC
ATCGAGCAGA AGACCGGTAA GCAAGCCAAT ATCATACTCA ATGCCAAAAC CAAGGCGCTG
ATTGAAGAGA TCCACCAGCG TCATCCTGAC CACATCTATC TGTTTCAATC CTATCGCAGT
CAACAAATGC AGCATGCAGC GCCTAAGCCG CTCAGTCGCC GCGCGGTGAC CAAAGCCTTT
GCCTTCGTCG GTGAAGACAT CAAGGTCGCA TTAGGGACCC ACTCGATGCG TAAGACCCGT
GGTTATCACC TGTATCAGTC ATGTAAAGAC ATTGGACGGG TGATGCGCAT GCTTAGACAC
GGGTCTGAGG CCGTCACCCT ACGCTACATA GGTATTACCC AGCAGCAAAT CGATAAGGAC
TTTGTTGAGC TAGAAATCTA A
 
Protein sequence
MKEVEAVKSR DTIKLISYLL ERHFGQQMAD VWNIGLNLAL RISDLLAIKF SDIQGDRLTI 
IEQKTGKQAN IILNAKTKAL IEEIHQRHPD HIYLFQSYRS QQMQHAAPKP LSRRAVTKAF
AFVGEDIKVA LGTHSMRKTR GYHLYQSCKD IGRVMRMLRH GSEAVTLRYI GITQQQIDKD
FVELEI