Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_1254 |
Symbol | |
ID | 4924077 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | - |
Start bp | 1452361 |
End bp | 1452921 |
Gene Length | 561 bp |
Protein Length | 186 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 640162794 |
Product | phage integrase family protein |
Protein accession | YP_001093383 |
Protein GI | 127512186 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.709211 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAGAAG TCGAGGCGGT GAAAAGCCGC GATACCATCA AGCTTATCAG TTATCTGCTT GAGCGTCACT TTGGTCAGCA GATGGCCGAT GTGTGGAATA TCGGACTCAA CCTGGCGCTG CGCATCTCCG ATCTACTGGC GATCAAGTTT AGCGATATCC AAGGTGACCG CTTAACCATC ATCGAGCAGA AGACCGGTAA GCAAGCCAAT ATCATACTCA ATGCCAAAAC CAAGGCGCTG ATTGAAGAGA TCCACCAGCG TCATCCTGAC CACATCTATC TGTTTCAATC CTATCGCAGT CAACAAATGC AGCATGCAGC GCCTAAGCCG CTCAGTCGCC GCGCGGTGAC CAAAGCCTTT GCCTTCGTCG GTGAAGACAT CAAGGTCGCA TTAGGGACCC ACTCGATGCG TAAGACCCGT GGTTATCACC TGTATCAGTC ATGTAAAGAC ATTGGACGGG TGATGCGCAT GCTTAGACAC GGGTCTGAGG CCGTCACCCT ACGCTACATA GGTATTACCC AGCAGCAAAT CGATAAGGAC TTTGTTGAGC TAGAAATCTA A
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Protein sequence | MKEVEAVKSR DTIKLISYLL ERHFGQQMAD VWNIGLNLAL RISDLLAIKF SDIQGDRLTI IEQKTGKQAN IILNAKTKAL IEEIHQRHPD HIYLFQSYRS QQMQHAAPKP LSRRAVTKAF AFVGEDIKVA LGTHSMRKTR GYHLYQSCKD IGRVMRMLRH GSEAVTLRYI GITQQQIDKD FVELEI
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