| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1248 |
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| Symbol | |
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| ID | 4924285 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 1446190 |
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| End bp | 1446672 |
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| Gene Length | 483 bp |
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| Protein Length | 160 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640162788 |
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| Product | phosphoribosylaminoimidazole carboxylase, catalytic subunit |
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| Protein accession | YP_001093377 |
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| Protein GI | 127512180 |
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| COG category | [F] Nucleotide transport and metabolism |
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| COG ID | [COG0041] Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase |
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| TIGRFAM ID | [TIGR01162] phosphoribosylaminoimidazole carboxylase, PurE protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.303671 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAATAAAG CAAGAGTTGC AATCATCATG GGTTCACAGA GCGATTGGCC GACCATGAAA
AATGCCACCA CAGTCCTGGA TGCCCTGGGG ATCGCCTACA GCAAACAGGT GGTCTCGGCG
CACCGCACCC CAGAGCGTCT GGTGAGCTTC AGCCATGGCG CGGCCGACGA AGGGATCGAG
GTGATCATCG CCGGTGCTGG CGGCGCCGCG CATCTGCCGG GCATGACGGC AGCCATGACG
CATCTGCCTG TGATTGCGGT GCCCGTGATG AGCAAGGCCC TGAAAGGGAT GGATAGTCTA
CTTTCTATCG TGCAGATGCC AAAAGGGGTT GCGGTGGCGA CTCAGGCGAT TGGCGATTCA
GGCGCCTTTA ACGCCGGCCT GATGGCGGCG CAAATTCTAG CCTTGGGCGA TAGCGAACTG
ACCCAGCGTC TGTGTGACTG GCGTGCTAGC CAAACCTCAG GTGTACCGCT GGAGGTAGAA
TAA
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| Protein sequence | MNKARVAIIM GSQSDWPTMK NATTVLDALG IAYSKQVVSA HRTPERLVSF SHGAADEGIE
VIIAGAGGAA HLPGMTAAMT HLPVIAVPVM SKALKGMDSL LSIVQMPKGV AVATQAIGDS
GAFNAGLMAA QILALGDSEL TQRLCDWRAS QTSGVPLEVE
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