| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1245 |
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| Symbol | |
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| ID | 4923242 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 1443918 |
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| End bp | 1444859 |
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| Gene Length | 942 bp |
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| Protein Length | 313 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 640162785 |
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| Product | LysR family transcriptional regulator |
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| Protein accession | YP_001093374 |
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| Protein GI | 127512177 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0000547224 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCCTCA GACTACAGGC ACATCTTGGT ACCCTCAGGC AGATGGAGAT CTTGCTGGCT
GTCTATGATA GCGGCAGCGT CAGCGGCGCC GCCGAGACCC TGCACCTCAC TCAGCCGACC
ATCTCGATGC AGCTCAAGAA GCTCGCCGAT GTGATAGGTT TCCCCCTGTA TAACATAGTG
GGTCGCAAGG TGGTGTTTAC CGAGGCGGGG CTGGAGGTGG TTAAATCGGC CACAGAGATC
CTCGACAGCT TTGCGAGGCT GGAGATGTCG CTGTCGGACA TGGGGGAGCT CAAATCGGGT
ACCCTGCGCC TGGCGGTGGT GACCACCTCG AAATACTTTA TTCCCCACCT GCTCGGCCCC
TTCTGCGAGC GCTATCCCAA TGTCGCAGTG CAGCTAAATG TGGGTAACCG CCAGCAGATC
ATTGAGCGCC TCAAACAGGG CATCGACGAC TTCTACGTGT TCAGTCATCC CCCAGCGGAT
CTCAACACAG ATAGTATCGA ATTCTTCAAC AATCCTCTGG TGGCTATCGC CCAGGAGAAT
CATCCCCTGG TCAGTCAGGA TGGCGTTTCG TTAGCCGAGC TCTGTGATGC GCCCTTCTTA
ATGCGTGAAA ATGGCTCGGG CACCCGCTTG GCGATTGAGC GTTTCATGGC GAAACAGGGG
GTGAAGCTTA ACGTGAAGAT GACCATAGAG AGTAATGAGG CGATCAAACA CTCGGTGATG
TCAGGACTGG GCGTCAGCAT ACTCTCGGCC CATACCCTCG CCTTTGGCGG CAATACCGGG
CTGGCGCAGC TGAATGTGAA GGAATTGCCG ATCAATTCCA ACTGGTATTT TCTCTGGCTT
AAATCAAAAC GTCCCTCGGC AATCGCTCAG GCCTTCTTGA CCCATGTGGA AAGCGAGGGA
CGTGAGATGC TACTCACCGA GCTGGCAAAA CACAGGCTTT AG
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| Protein sequence | MSLRLQAHLG TLRQMEILLA VYDSGSVSGA AETLHLTQPT ISMQLKKLAD VIGFPLYNIV
GRKVVFTEAG LEVVKSATEI LDSFARLEMS LSDMGELKSG TLRLAVVTTS KYFIPHLLGP
FCERYPNVAV QLNVGNRQQI IERLKQGIDD FYVFSHPPAD LNTDSIEFFN NPLVAIAQEN
HPLVSQDGVS LAELCDAPFL MRENGSGTRL AIERFMAKQG VKLNVKMTIE SNEAIKHSVM
SGLGVSILSA HTLAFGGNTG LAQLNVKELP INSNWYFLWL KSKRPSAIAQ AFLTHVESEG
REMLLTELAK HRL
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