| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1239 |
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| Symbol | |
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| ID | 4923553 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 1438311 |
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| End bp | 1440023 |
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| Gene Length | 1713 bp |
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| Protein Length | 570 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640162779 |
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| Product | PepSY-associated TM helix domain-containing protein |
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| Protein accession | YP_001093368 |
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| Protein GI | 127512171 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3182] Uncharacterized iron-regulated membrane protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.0137948 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAGAGA CTTTTTTCCG CTCCATGACC TGGATGCACA CCTGGGCTGG CCTCGCCGTT
TGCTGGCTAC TACTGCTTAT CTTCTTTGCC GGCAGCCTGA GCTATTTTCG TCACGAGATC
AGCCTGTGGA GCAAACCCGA GCTGCACAAG TCTGTCTTTC AAGACTATGA CCAGCAGCGA
ATTGGTCAAC AGATCGCAAA GGGCCAGGCC TATCTGGCCG ACAAGGCCCC CGACGCCGCG
AGCTGGACCA TCTCCTTCCC GAGTGAGCGC AAGCCTTACC TGAGCTTCGG CTGGGCGGAC
GAGCCTAAAA AGGGCGAGCG GCGCGGCAAG TTCCATGAGC ATGTGGTCAG CCAGGATGGT
CAGCAGATGA TCACCGAGAT CCGCGACTCC CGAGGTGGCA ACTTCTTCTA CCGCCTGCAT
TTTGATCTGC ATTACCTGCC GGTGGTGGCC GCGCGCTGGA TAGTGGGGCT CGCCACCATG
GCGATGCTGA TCGCCCTAAT AAGCGGCGTG GTGATCCACA AACGGATCTT TAAAGACTTC
TTCAGTTTTC GGCCGGCTAA AGGCAGTCGC TCTTGGCTCG ACGCCCACAA TGTCAGCGCC
GTGATGGCCC TGCCCTATCA TCTGATCATC ACCTACACGG GTCTCATCAC TCTGATGTTC
ATGTTCATGC CTTGGGGCGC ATTGCAAGAG TACGATGGCG ACGTGCGCGC CTTCAGGGCC
GACCTAAACC CCGCCCGCAT TCAGACAAAA CCCAGCAAAG ATGCGGCGCC GCTCATCGAG
GCCGCTAGCC TGCTACCTCA AATAGAACAG CAGTGGGGCG CCGCTCCGCT TAAGCAGGTT
AGCATCAGCG CGCCAGGGAA AGATAACAGC CGTATCAGCT TCGCCCTCAA CAGCGAGCAG
ACGGTGACAG ATAGGCGTAA TCTGTTGATT TTCGACGGAG TAAAGGGTGA ACTGATATCT
AAGGCTGATC CGGACAGCGC CACCTACAAG ACCTACGACA CCCTGATGGC GCTGCATACG
GCGCGCTTTG CCGACTGGGC CTTACGAGGT TTCTTCTTCC TCTGCGGTCT GCTCGGCTGC
GCCATGGTCG CCACAGGCAC CCTGCTATGG GCGGTAAAGA TCGCCCAGAA ACAACAAAAG
GCGATTCAAT CTGGCACCAA GCCGACTGTC GGCCTCAGGC TGGTAAACGG GCTCAACATC
AGCTTCATCT GCGGCCTTCC TCTCGCCACC GCAATCTTTT TTTATGCCAA CCGTCTATTA
CCACTGGACA TAGCCGACAG GGCCCAGCGT GAGGTGGACG CCTTCTTCAT TATGCTGGCA
ATCATCGCCC TAGTCGCCCT GTGGGATGGC CTTCGCGGTG CGCAGTCCTG GCGGCGCTGG
CGTCAATGGC TATTGCTGGG CGCCCTGGCC TATGCGGCGC TGCCGCTGCT GGGCGCCGTC
ACCTCAGGGC AGAGTCTGCT CGCTAACATG ATTGATAATC AGTGGACGCT GGTAGGCTTC
GATATGGTCA GCCTGCTGTT TGCCCTGGCA CTGGGATTTG CCGCCAGGCA GGTTAGGCAG
TCAAAGCTAA TCAATCCGCG CCAAAGTGCC ACCAGCCCGA GAACAAGCAC GGCAAGAGCT
GGCAGGTCAA GAGTTGGAAG AGTTAGCAGA CCCAACACAA CGGCTATGAC TCGTGAGACA
AGAGATACTG ATTTAGAGGA GGTGCGCCAA TGA
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| Protein sequence | MKETFFRSMT WMHTWAGLAV CWLLLLIFFA GSLSYFRHEI SLWSKPELHK SVFQDYDQQR
IGQQIAKGQA YLADKAPDAA SWTISFPSER KPYLSFGWAD EPKKGERRGK FHEHVVSQDG
QQMITEIRDS RGGNFFYRLH FDLHYLPVVA ARWIVGLATM AMLIALISGV VIHKRIFKDF
FSFRPAKGSR SWLDAHNVSA VMALPYHLII TYTGLITLMF MFMPWGALQE YDGDVRAFRA
DLNPARIQTK PSKDAAPLIE AASLLPQIEQ QWGAAPLKQV SISAPGKDNS RISFALNSEQ
TVTDRRNLLI FDGVKGELIS KADPDSATYK TYDTLMALHT ARFADWALRG FFFLCGLLGC
AMVATGTLLW AVKIAQKQQK AIQSGTKPTV GLRLVNGLNI SFICGLPLAT AIFFYANRLL
PLDIADRAQR EVDAFFIMLA IIALVALWDG LRGAQSWRRW RQWLLLGALA YAALPLLGAV
TSGQSLLANM IDNQWTLVGF DMVSLLFALA LGFAARQVRQ SKLINPRQSA TSPRTSTARA
GRSRVGRVSR PNTTAMTRET RDTDLEEVRQ
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