| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1217 |
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| Symbol | alaS |
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| ID | 4922999 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 1412779 |
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| End bp | 1415403 |
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| Gene Length | 2625 bp |
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| Protein Length | 874 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 640162751 |
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| Product | alanyl-tRNA synthetase |
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| Protein accession | YP_001093346 |
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| Protein GI | 127512149 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0013] Alanyl-tRNA synthetase |
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| TIGRFAM ID | [TIGR00344] alanine--tRNA ligase |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.00997618 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTATCAAA CCACTGCAGC GCTGAGAAGT GCTTTCTTGG AGTTTTTCCG CAGAAACGGT
CACCAGGTTG TGGACAGCAG TTCACTGGTA CCTGGCAATG ATCCCACCTT GCTATTTACC
AACGCAGGGA TGAACCAATT TAAAGATGTT TTCCTTGGGG AAGACAAGCG CGACTACAGC
CGCGCCACTA CGGCACAACG CTGCGTGCGC GCCGGTGGTA AGCACAACGA CCTGGATAAT
GTCGGTTACA CCGCACGTCA TCACACCTTC TTCGAAATGC TGGGTAACTT CAGCTTCGGT
GATTATTTCA AGCAAGATGC GATTCGCTTC GCCTGGACCT TCCTGACCGA AGAACTCAAG
CTGCCAAAAG AGCGCCTGTG TGTCACCGTC TATGAGACAG ACGATGAAGC CTTCGAGATC
TGGAACAAAG AGATTGGCGT CGCGGCCGAG AACATTATCC GCATCGGCGA TAACAAGGGG
GCGGCATACG CCTCAGATAA CTTCTGGCAG ATGGGCGATA CCGGTCCTTG TGGCCCTTGT
ACCGAGATCT TCTACGATCA CGGCGAGCAC ATCTGGGGCG GCCGTCCCGG CACGCCGGAA
GAAGATGGTG ACCGCTTCAT CGAGATCTGG AACATAGTCT TCATGCAGTA TAACCGTCAA
GCCGACGGCA CCATGGATCC ACTGCCTAAG CCTTCTGTCG ATACCGGTAT GGGCATCGAG
CGTATCGCCG CTATCATGCA GGGTGTGCAC TCAAACTATG AGATCGATAT CTTCCAGTCA
CTGATCAAGA AGACCGCCGA GATCCTGGGC GTGACCGATC TGGAGAACAA GTCGCTGCGC
GTAGTCGCCG ACCATATCCG TTCTTGCGCC TTCTTGGTGG CCGATGGTGT GATGCCATCA
AACGAGGGCC GTGGTTACGT ATTGCGCCGC ATCATCCGCC GCGCCGTGCG TCATGGTAAT
AAGCTAGGTG CTACCGAGGC CTTCTTCTAC AAGCTGGTTC CTACACTGAT TGAAGTGATG
GGCGATGCGG CTAAAGAGCT GGTGGCGACC CAGGCGATCG TCGAAAAGGC GCTTAAGGCG
GAAGAGGAGC AGTTTGCCCG TACTCTGGAG CGTGGTCTTG GTATTCTCGA TAATGCCCTG
AGCCAGCTAG AGGGTAAGGA GCTTGACGGT GAGACCGCCT TTAAGCTGTA CGACACCTAT
GGCTTCCCGG TTGATCTGAC GGCTGACGTC TGCCGAGAGC GTGATATCAC GGTCGATGAA
GCCGGCTTCG AAGCGGCCAT GGCCGAGCAG CGCAGCCGCG CCCAGGCGGC GGGTCAGTTC
GATACCGATT ACAACGATAG CCTGAAGATC GACGCCGAAA CCGAGTTTTG CGGTTATAGC
GACCTTAATG GCGAAGCCAA GGTCATCGGC CTCTATGTCG ATGGTCAGGC GGTCGACGCG
CTAGCCGAAG GCGACCAAGG TGTGGTGGTG CTCGATAGCA CGCCTTTCTA CGGCGAATCT
GGTGGCCAAT GTGGCGACAA GGGCCTGCTG AGCGCAGAAG GTGTCGAGTT CGAGGTGAAG
GACACGCAAA AATATGGTCA GGCAATGGGC CATATCGGCC TGGTCAAGGC CGGCAGTATC
GCTATGGGTC AAACCCTTAA CGCGGCAGTG GATAAGAAGC TCAGACATCG CACCGAGCTG
AACCACTCTG TGACTCACTT GCTACACGCC GCGCTGCGTC AGGTGCTGGG TACTCACGTG
AGCCAGAAGG GTTCTCTGGT TGAGCCTGAG CGTCTGCGTT TCGACTTCTC TCACTTCGAG
GCAGTTAAGC GTGAAGAGCT TAAGCAGGTC GAAGATCTGG TTAACACTCA GATCCGTCGT
AACCACGAGC TGAAGGCCGA GGTGATGGAT ATCGACCAGG CGAAAGAGAA AGGCGCCATG
GCTTTGTTTG GTGAGAAATA TGACTCACAG GTTCGCGTGG TGACCATGGG TGACTTCTCT
ATCGAGCTGT GTGGTGGTAC TCACGTAGGC CGCACAGGCG ATATCGGTCT GTTTAAGATC
ACCTCTGAAG GCGGTATCGC AGCCGGCATC CGTCGTATCG AGGCGGTCAC AGGTGCGGCA
GCAATCGCCT ATGTGGGTGA GCAGCAGGCG CAGCTTGAAC AAGCCGCCTC GCTACTTAAA
GGCGACAGCG CCTCGGTAGT GGCTAAGCTC AAAGCCCAGC TGGATAAGAC TAAGCAGCTT
GAGAAAGAGC TGTCTCAGCT TAAAGACAAG CTCGCGGCTG CGACCAGCGC TGATCTGGCC
GGGGAGGCTC AGGAGCTTGC TGGCGTTAAG GTACTGGTTA AGCTGCTCGA AGGTGTCGAG
GCCGGCGCGC TGCGTGGCCT GCAGGATGAG CTTAAGCAGA AGCTGCAATC TGGCATTGTG
GTGCTTGGCA TCGCAGGGGA CGCCAAGGTG AACCTGATTG CCGGCGTCAC CAAAGACTTG
ACCGGTAAGG TCAAGGCCGG TGAGCTAGTG GCTATGGTGG CTGCTCAGGT GGGCGGTAAG
GGCGGTGGAC GCCCAGACAT GGCCCAGGCC GGTGGCAGCG AGCCCGAGAA GTTAGCAGGT
GCCCTGGATT CTGTTATCCC TTGGTTGTCA GAACGTTTGG CCTAA
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| Protein sequence | MYQTTAALRS AFLEFFRRNG HQVVDSSSLV PGNDPTLLFT NAGMNQFKDV FLGEDKRDYS
RATTAQRCVR AGGKHNDLDN VGYTARHHTF FEMLGNFSFG DYFKQDAIRF AWTFLTEELK
LPKERLCVTV YETDDEAFEI WNKEIGVAAE NIIRIGDNKG AAYASDNFWQ MGDTGPCGPC
TEIFYDHGEH IWGGRPGTPE EDGDRFIEIW NIVFMQYNRQ ADGTMDPLPK PSVDTGMGIE
RIAAIMQGVH SNYEIDIFQS LIKKTAEILG VTDLENKSLR VVADHIRSCA FLVADGVMPS
NEGRGYVLRR IIRRAVRHGN KLGATEAFFY KLVPTLIEVM GDAAKELVAT QAIVEKALKA
EEEQFARTLE RGLGILDNAL SQLEGKELDG ETAFKLYDTY GFPVDLTADV CRERDITVDE
AGFEAAMAEQ RSRAQAAGQF DTDYNDSLKI DAETEFCGYS DLNGEAKVIG LYVDGQAVDA
LAEGDQGVVV LDSTPFYGES GGQCGDKGLL SAEGVEFEVK DTQKYGQAMG HIGLVKAGSI
AMGQTLNAAV DKKLRHRTEL NHSVTHLLHA ALRQVLGTHV SQKGSLVEPE RLRFDFSHFE
AVKREELKQV EDLVNTQIRR NHELKAEVMD IDQAKEKGAM ALFGEKYDSQ VRVVTMGDFS
IELCGGTHVG RTGDIGLFKI TSEGGIAAGI RRIEAVTGAA AIAYVGEQQA QLEQAASLLK
GDSASVVAKL KAQLDKTKQL EKELSQLKDK LAAATSADLA GEAQELAGVK VLVKLLEGVE
AGALRGLQDE LKQKLQSGIV VLGIAGDAKV NLIAGVTKDL TGKVKAGELV AMVAAQVGGK
GGGRPDMAQA GGSEPEKLAG ALDSVIPWLS ERLA
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