| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1209 |
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| Symbol | |
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| ID | 4923154 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 1403308 |
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| End bp | 1404375 |
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| Gene Length | 1068 bp |
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| Protein Length | 355 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 640162743 |
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| Product | pseudouridylate synthase |
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| Protein accession | YP_001093338 |
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| Protein GI | 127512141 |
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| COG category | [S] Function unknown |
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| COG ID | [COG0585] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR00094] tRNA pseudouridine synthase, TruD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.269002 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCCCAC TACATTATTT GTATGGCCAG CCCGAGGCGA GCGCCGACTT AAGAACCTAC
AACAGCGATT TTATCGTGCA GGAGATCTTG CCATTTCTTC CGACGGGTGA GGGCGAGCAC
CACATGCTGC ACATCCGCAA GGAGGGGTTA AACACCGCGG ATGTGGCACG CATGCTCTCA
AGCTTTGCCG GTGTGCATCC AAAAGAGGTG ACCTTCGCCG GCCAGAAAGA CAGACACGCC
ATCACAGAGC AGTGGTTTGG GGTGCGTATT CCCGGCAAGA GCATGCCAGA CTGGCAGTCG
CTCAATAGCG AGCAGCTCAC GGTGCTATCA AGCGCCCGTC ACGGCAAGAA GCTGCGCACC
GGCGCCCTGG CGGGTAACCG CTTCACCCTG ACCCTAAGGG CCGTGTCTGA CATGGACGCA
CTGGTGCGAC GCATCGAGCT GATTAAAGCC ACAGGCGTGC CTAACTATTT TGGCGAGCAG
CGCTTCGGCC ATGACGGAAA GAACCTGATT TTCGGTCGTC AGATGCTCTC GGGCAAAAAG
AAGGTGAAAG ACAGAAACAA GCGCAGCATC TATCTCTCGG CGGTGCGCTC GTATCTCTTC
AACCAGGTAG TGAGTGAGCG GCTTCGCCTA CACCAGCTCA AGACACTCGA TGGTGACTGT
GTGATGTTGG CCGGTAGCAA GAGCTACTTC GTGGCCAATC CCTGGGATGA ATCGCTGTAT
GGTCGTCTGG CGGAAAACGA TATTCAACTC TCGGCGCCCA TGTGGGGTCG GGGCCTGGCG
CTGAGTGAGG CCGAGGCGTT AGCCTTCGAG CAGGGCGTTT GTGGTCAGTA TCCTGAGGAT
CTTGCCGGCC TCGAGCAGGC GGGGCTCAAT CAGGAGCGCC GCCCGCTGCT TCTCGCGCCG
CAGCAGCTAA GCTATGAGAT CCAGGAAGAC ACCTTAGTGA TTAAGTTCGC CCTGCCGGCC
GGTAGTTTTG CCACCTCTGT GCTGCGGGAA CTGGTGAATT ATCAAGATGT CAAAGAGCGG
GAATATCAGG CCAGAAAGGC CGCAGCGAGC GAGCAAGCCC ATGATTAA
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| Protein sequence | MTPLHYLYGQ PEASADLRTY NSDFIVQEIL PFLPTGEGEH HMLHIRKEGL NTADVARMLS
SFAGVHPKEV TFAGQKDRHA ITEQWFGVRI PGKSMPDWQS LNSEQLTVLS SARHGKKLRT
GALAGNRFTL TLRAVSDMDA LVRRIELIKA TGVPNYFGEQ RFGHDGKNLI FGRQMLSGKK
KVKDRNKRSI YLSAVRSYLF NQVVSERLRL HQLKTLDGDC VMLAGSKSYF VANPWDESLY
GRLAENDIQL SAPMWGRGLA LSEAEALAFE QGVCGQYPED LAGLEQAGLN QERRPLLLAP
QQLSYEIQED TLVIKFALPA GSFATSVLRE LVNYQDVKER EYQARKAAAS EQAHD
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