Gene Shew_1208 details

Gene Information

• Locus tag: Shew_1208
• Symbol: ispF
• ID: 4922444
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella loihica PV-4
• Kingdom: Bacteria
• Replicon accession: NC_009092
• Strand: +
• Start bp: 1402813
• End bp: 1403298
• Gene Length: 486 bp
• Protein Length: 161 aa
• Translation table: 11
• GC content: 56%
• IMG OID: 640162742
• Product: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
• Protein accession: YP_001093337
• Protein GI: 127512140
• COG category: [I] Lipid transport and metabolism
• COG ID: [COG0245] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
• TIGRFAM ID: [TIGR00151] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase

Plasmid Coverage information

• Num covering plasmid clones: 9
• Plasmid unclonability p-value: 0.0146906
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 23
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGAATATAC GTATCGGCCA TGGTTTCGAT GTGCATAAAT TTGGCGGCGA GCTGCCGCTG 
ATCTTAGGCG GCGTTGAAGT TCCCTATGAC ACTGGCCTGG TGGCCCATTC GGATGGCGAT 
GTAGTGCTGC ATGCCATCTC AGATGCGATT CTCGGCGCCA TGGCGCTCGG AGATATCGGC 
AAACATTTTC CCGATACCGA CCCAGACTTT AAGGGGGCCG ACAGCCGCGT GCTGCTACGT 
CACTGCTATC AGCTGGCGCT GGATAAGGGC TATAGGCTGG GTAATCTGGA TGTCACTATT 
ATTGCCCAGG CGCCTAAGAT GCTACCGCAC ATTCAGGCGA TACGTGAGTG TCTGAGTGCA 
GACCTTGAAA GCGACATAGA GGCGATCAAC GTCAAGGCCA CCACCACAGA GAAGCTTGGC 
TTTACCGGAC GCAAAGAGGG GATAGCGGTG GAAGCCGTGG TGCTGATGTG CGCCGCCCCG 
AGATAA 

 

Protein sequence

MNIRIGHGFD VHKFGGELPL ILGGVEVPYD TGLVAHSDGD VVLHAISDAI LGAMALGDIG 
KHFPDTDPDF KGADSRVLLR HCYQLALDKG YRLGNLDVTI IAQAPKMLPH IQAIRECLSA 
DLESDIEAIN VKATTTEKLG FTGRKEGIAV EAVVLMCAAP R