| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1202 |
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| Symbol | |
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| ID | 4922040 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 1395358 |
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| End bp | 1397562 |
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| Gene Length | 2205 bp |
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| Protein Length | 734 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 640162736 |
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| Product | (p)ppGpp synthetase I, SpoT/RelA |
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| Protein accession | YP_001093331 |
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| Protein GI | 127512134 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG0317] Guanosine polyphosphate pyrophosphohydrolases/synthetases |
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| TIGRFAM ID | [TIGR00691] (p)ppGpp synthetase, RelA/SpoT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.0000141345 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTATCTG TTAGAGAAGC ACATTTTAAA GACACAGATT TTCAATTGAC CGAATGGGTT
AATCGTTATC TGAGTGACGC CGATGACGCC AGCACCTTAC TTGCGCTAAT AAAGCAGGTC
GAAGCCCTGG TGGCGAAACA TGATGCTAAC GATACCTTGC TGATCGGCCG CGCCCGCGAG
CTGATTGAGA TCCTCGCGCC GCTCAACATG GATATCGAGA CCCTGCAGGC GGCGGTGATC
TTCGTGGTTT TCGACGCTGG CCTCATGACT GAGGAGCAGA TGCTGGAGCT GTTTGGCGAC
AAGCTCACCA CGCTAGTGAA CAGCGTGGTG ACCATGGACG CCATTGGCGC CCTCAAGGTC
AACGAACAGA GCCGTAACGC CGAGCCCCAG ATAGATAACA TACGTAAGAT GCTGCTGGCC
ATGGTGGAAG ATGTGCGCGC CGTTGTGATC AAGTTGGCCG AGCGTATCTG CCTGCTGCGG
GAAGTGAAAA ATGCCGACGA GGAAACTCGT GTGTTGCTGG CGCGGGAGAT TGCCGACATC
TATGCGCCGC TGGCCAACCG CCTGGGCATA GGCCAGCTCA AGTGGGAGCT GGAAGATATC
TCCTTCCGTT ATCTGCATCC TGATACCTAT AAAGACATTG CCAAGCAGCT CGATGGCAAG
CGGATGGATC GTGAGATCTA CATAGAGAAC TTCGTCAATC AGCTGCAGCA GCGACTGGAC
GAGGAGCAGA TCCGCGCCAA GGTCTACGGC AGACCCAAAC ATATCTACAG CATCTGGAAG
AAGATGCGCG GTAAAGATCT CACCTTCGAT GAGCTGTTTG ACGTGCGCGC CGTGCGTATC
GTCACCGAGC GCTTACAAGA TTGCTATGGG GCTTTAGGTG TGGTGCATAC CCTTTGGCAT
CATATTCCCA AAGAGTTCGA CGACTATGTC GCCAACCCTA AACCCAATGG CTATCAGTCG
ATTCACACCA TAGTGGTGGG CCCAGAGGGT AAGACGGTGG AGATCCAGAT CCGCACCGAA
CAGATGCATG AAGATGCCGA GCTGGGGGTG GCTGCCCATT GGAAGTATAA AGAGGGCACT
ACGGGTAAGC AGAGCGGCTA CGAAGAGAAG ATCAACTGGC TGCGTAAGAT CCTGCAGTGG
CAGGAAGATG TGGCCGAGAG TGGCAACTTG GTGGATGAGG TCCGCAGTCA GGTGTTTGAA
GACAGAGCCT ATGTCTTTAC CCCGAATGGC GACGTGGTGG ACTTACCCAT GGGCTCCACC
GTGCTGGATT TCGCCTACTA TATTCACTCA CAGGTAGGCC ATAAGTGTAT CGGCGCCAAG
GTCGATGGCC GCATCGTGCC CTTCACCTAC CAGGTGGAGA CCGGCGAGCG GGTCGAGATC
ATCACCTCCA AGCATCCTAA CCCTAAGCGG GATTGGCTCA ATCCTAACCT GGGTTATATC
AAGGCGTCGC GTACCCGCTC TAAGATCCAG CACTGGTTCA AGCAGCAAGA CAGAGACAAG
AATATCGTCG CCGGACGCGA GATGCTCGAG GCCGAGCTGG CACGTTCTGG ATTGACCCTG
AAAGATGCCC ACAGCGCCGT GGAACGTTTC AACATGGTGG GGATGGATGA CCTGCTGGCC
GGTATCGGTG GTGGCGACGT TCGCCTCAAC CAGGTGGTTA ACCATGTGCA GAGCCGGATG
CGGGTCAACG AGGTCTCCGA AGAGGAGGCG CTGGAAGATC TGCTGAAGAA GAACCAAGCG
CGCGCCACAG GTAAGGGCAA GGGCCAGGTC GAGGTCAACG GTGTGGGCAA CCTGCTCAGC
CATATCGCCA AGTGTTGTCA GCCGGTGCCG GGCGATGAGA TCTTTGGCTT CATCACCAAG
GGCAGAGGGA TCTCTGTGCA CAGGGCCGAC TGTGAGCAGG TTAAAGAACT GATGCGGGTG
CACCCAGAGC GCAGCGTCGA TGTGGTCTGG GGCGAGAACT ACTCAGGCGG CTATAAACTT
AAGCTCAAGG TGCTGGCTAA CGATCGCAGC GGTCTGCTTA GGGATCTTAC CTCTGTGCTG
GCGGCGGAGA AATCCAACGT GCTGGCCATG AGCTCATCGT CGGATGTGAA GACCCAGACG
GCGGCTATCG AGCTGGAGCT TGAGCTGTAT AACCTGGAAG GTTTATCTCG GGTGATCGCC
AAGCTGTCTC AGGTGGCCGG CGTCATCGAG GCGCGGCGTC TCTAA
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| Protein sequence | MVSVREAHFK DTDFQLTEWV NRYLSDADDA STLLALIKQV EALVAKHDAN DTLLIGRARE
LIEILAPLNM DIETLQAAVI FVVFDAGLMT EEQMLELFGD KLTTLVNSVV TMDAIGALKV
NEQSRNAEPQ IDNIRKMLLA MVEDVRAVVI KLAERICLLR EVKNADEETR VLLAREIADI
YAPLANRLGI GQLKWELEDI SFRYLHPDTY KDIAKQLDGK RMDREIYIEN FVNQLQQRLD
EEQIRAKVYG RPKHIYSIWK KMRGKDLTFD ELFDVRAVRI VTERLQDCYG ALGVVHTLWH
HIPKEFDDYV ANPKPNGYQS IHTIVVGPEG KTVEIQIRTE QMHEDAELGV AAHWKYKEGT
TGKQSGYEEK INWLRKILQW QEDVAESGNL VDEVRSQVFE DRAYVFTPNG DVVDLPMGST
VLDFAYYIHS QVGHKCIGAK VDGRIVPFTY QVETGERVEI ITSKHPNPKR DWLNPNLGYI
KASRTRSKIQ HWFKQQDRDK NIVAGREMLE AELARSGLTL KDAHSAVERF NMVGMDDLLA
GIGGGDVRLN QVVNHVQSRM RVNEVSEEEA LEDLLKKNQA RATGKGKGQV EVNGVGNLLS
HIAKCCQPVP GDEIFGFITK GRGISVHRAD CEQVKELMRV HPERSVDVVW GENYSGGYKL
KLKVLANDRS GLLRDLTSVL AAEKSNVLAM SSSSDVKTQT AAIELELELY NLEGLSRVIA
KLSQVAGVIE ARRL
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