| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1187 |
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| Symbol | |
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| ID | 4923298 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 1379520 |
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| End bp | 1380680 |
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| Gene Length | 1161 bp |
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| Protein Length | 386 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 640162721 |
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| Product | riboflavin biosynthesis protein RibD |
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| Protein accession | YP_001093316 |
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| Protein GI | 127512119 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0117] Pyrimidine deaminase
[COG1985] Pyrimidine reductase, riboflavin biosynthesis |
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| TIGRFAM ID | [TIGR00227] riboflavin-specific deaminase C-terminal domain
[TIGR00326] riboflavin biosynthesis protein RibD |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.379971 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.943234 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGCGATGA GCATGGCCTG GTCCAAATTT GATTCCCAGA TGATGGCGCG TGCCATTAAG
TTGGCCCGCA AGGGGCAATA CACCACCAGT CCCAACCCTA ATGTCGGCTG CGTAATAGTC
CAAGGGGAGA CCCTGGTGGG TGAAGGATTT CATATCGCCG CCGGCGGCCC CCACGCCGAG
GTGCACGCGC TGCGTATGGC TGGCGATAAG GCCAAAGGCG CCACCGCCTA TGTAACCTTA
GAGCCCTGTA GCCATTATGG CCGAACGCCG CCCTGCGCCG AGGCGCTGAT CAAAGCTGAG
GTTTCCCGCG TGGTGGTGGC GGTGACCGAC CCTAATCCTC AGGTATCTGG CCGTGGCATC
AAGATGCTCC AAGATGCAGG CATTCTCGTC GAGGTGGGTC TGCACCAGGA AGAGGCCGCA
GCACTCAACC CAGGCTTCAT GAAGCGGATG CGCAGCGGCC TGCCTTGGGT CGGCATCAAG
CTTGCGACCA GCCTGGATGG TAAGACGGCG CTCTCTAACG GCGTCTCTAA GTGGATCACA
GGGCCAGAGG CGCGCCGTGA CGTGCAGCGT ATGCGCGCCC GTTTCGATGC CGTCGTGACC
GGCATAGAGA CGGTACTGGC CGACGACCCT AGCCTGAATG TACGTCATCT GGAGCTTGGC
AGCCTGTCCG AGCAGTTAAC CGAGGCCGAC ATTCGTCAGC CACTTCGCGT GGTGCTCGAC
TCCCGCGCGC GCCTAGGTGC CAAGGCAAAA CTGTTTGAGA CACAATCCCC CGTGCTGCTG
GTGAGCTGTC AGCCCTATCC CGAGGCCGTG GCGAGCGCCT GGCCCGAGCA GGTGAGTCAG
TTGCAACTGC CAAGCGACAA TGGGCAGGTG CCGCTAAAGG CGCTGCTGGA ACATCTGGGA
TCTCAGCTTA ACAGCGTGAT GGTCGAGGCT GGGGCGACCC TGGCCGGCGC CTTCATGGCG
CAGGGGCTGG CGGACGAGCT GGTGCTGTAT CAGGCGCCGA AAATCTTAGG CGGCCATGGC
CGTAACCTGC TGGCACTGCC GGACTATACT GAGATGACGC AGCTGCCTGC GCTCAAGCTT
TGCGACGAGC GTGCGATCGG GGCCGACAGA CGCCTCACCT TTCAATTGAG TCACAATCAT
TTACCGAGCG ATAAAGAGTA G
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| Protein sequence | MAMSMAWSKF DSQMMARAIK LARKGQYTTS PNPNVGCVIV QGETLVGEGF HIAAGGPHAE
VHALRMAGDK AKGATAYVTL EPCSHYGRTP PCAEALIKAE VSRVVVAVTD PNPQVSGRGI
KMLQDAGILV EVGLHQEEAA ALNPGFMKRM RSGLPWVGIK LATSLDGKTA LSNGVSKWIT
GPEARRDVQR MRARFDAVVT GIETVLADDP SLNVRHLELG SLSEQLTEAD IRQPLRVVLD
SRARLGAKAK LFETQSPVLL VSCQPYPEAV ASAWPEQVSQ LQLPSDNGQV PLKALLEHLG
SQLNSVMVEA GATLAGAFMA QGLADELVLY QAPKILGGHG RNLLALPDYT EMTQLPALKL
CDERAIGADR RLTFQLSHNH LPSDKE
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