| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1183 |
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| Symbol | |
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| ID | 4923581 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 1373686 |
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| End bp | 1375350 |
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| Gene Length | 1665 bp |
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| Protein Length | 554 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 640162717 |
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| Product | putative ABC transporter ATP-binding protein |
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| Protein accession | YP_001093312 |
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| Protein GI | 127512115 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0488] ATPase components of ABC transporters with duplicated ATPase domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.976373 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTCAGT TTGTATACAG CATGCTACGC GTGGGCAAGA TAGTCCCGCC GAAGAAGCAG
ATCCTCAAAG ATATTTCCCT AAGCTTTTTC CCCGGCGCCA AGATCGGTGT CTTAGGCCTT
AACGGTTCGG GTAAATCCAC CCTGCTGCGC ATCATGGCCG GTATCGATAC CGAGATCGAG
GGTGAAGCGC GTCCGATGCA GGATCTTAAG ATAGGTTACC TGCCCCAGGA GCCTAAACTA
GATCCTCAGC AGACAGTGCG CGAAGCGATC GAAGAAGCGG TAAGTGAGGC CAAGAACGCC
CTGACCCGTC TCGATGAGGT TTACGCCCTA TACGCTGAAC CAGATGCCGA TTTCGACGCC
CTTGCCAAGG AGCAGGGTGA GCTGGAAGCC ATCATCCAGG CCCAGGATGC CCACAACCTG
GACAACATTC TCGAGCGCGC CGCCAACGCC CTGCGTCTGC CGGACTGGGA CGAAAAGATT
GAGGTATTAT CAGGGGGTGA GCGTCGCCGT GTGGCCATCT GTCGCCTGCT GCTTGAAAAG
CCAGACATGC TGCTGCTGGA CGAACCGACC AACCACCTGG ACGCCGAGTC TGTCGCCTGG
TTAGAGCGCT TCCTGCAAGA ATACACGGGT ACCGTTGTGG CCATTACCCA CGATAGATAC
TTCCTCGACA ACGCCGCCGG TTGGATCTTA GAACTCGACC GTGGCGAGGG TATCCCATGG
GAAGGCAACT ACTCTTCTTG GCTAGAGCAG AAAGAGGCCC GTCTGAAGCA GGAATCGGCT
GCCGAAAGTG CCCGCCAGAA GACCATCGCC AAGGAACTCG AGTGGGTTCG TCAAGGTGCC
AAGGGCCGTC AGTCAAAGGG CAAGGCACGT ATGGCACGTT TCGAAGAGCT GAACACCAAC
GACTACCAGA AACGTAACGA GACCAACGAA CTGTTTATTC CGCCAGGGCC ACGCCTGGGT
GACAAGGTGA TCGAGGTGAA CAACCTGACC AAGTCCTATG GCGACCGCGT GCTGATCGAC
AACCTGAGCT TCAGCGTACC TAAAGGCGCC ATCGTCGGTA TTATCGGTGC TAACGGTGCC
GGTAAGTCGA CCCTGTTTAA GATGATCAGC GGCGCCGAAC AGCCAGACAG CGGCAGCATC
GAAGTGGGTG ATACGGTTCA GATCGCCTCG GTGGAGCAGT TCCGTGATGC CATGAACGAC
AAGGCGACCG TATGGGAGGA GATCTCCGGC GGTCAAGATA TCATGCGTAT CAACAACACT
GAGATCCCGA GCCGCGCCTA CGTGGGCCGC TTCAACTTCC GCGGCGGCGA TCAGCAGAAG
ATCATCGGCA CCCTGTCCGG TGGTGAGCGC AACCGTGTGC ACCTTGCCAA GCTGCTCCAG
GCGGGCGGTA ACGTGCTGCT CCTCGATGAG CCCACCAACG ATCTCGACGT CGAAACCCTG
CGCGCCCTGG AAGAAGCCCT GCTTGAATTC CCTGGCTGTG CCATGGTGAT CTCGCATGAC
CGTTGGTTCC TCGACAGAAT CGCCACCCAC ATCCTGGATT ACCGCGACGA GGGTCAGGTG
AACTTCTACG AAGGTAACTA CACAGAATAC TCGACCTGGC TGAAAGAGAC TCTGGGTACG
GATGTGATTG AGCCGCACCG TCTCAAGTAC AAGCGCATGA GTTAA
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| Protein sequence | MAQFVYSMLR VGKIVPPKKQ ILKDISLSFF PGAKIGVLGL NGSGKSTLLR IMAGIDTEIE
GEARPMQDLK IGYLPQEPKL DPQQTVREAI EEAVSEAKNA LTRLDEVYAL YAEPDADFDA
LAKEQGELEA IIQAQDAHNL DNILERAANA LRLPDWDEKI EVLSGGERRR VAICRLLLEK
PDMLLLDEPT NHLDAESVAW LERFLQEYTG TVVAITHDRY FLDNAAGWIL ELDRGEGIPW
EGNYSSWLEQ KEARLKQESA AESARQKTIA KELEWVRQGA KGRQSKGKAR MARFEELNTN
DYQKRNETNE LFIPPGPRLG DKVIEVNNLT KSYGDRVLID NLSFSVPKGA IVGIIGANGA
GKSTLFKMIS GAEQPDSGSI EVGDTVQIAS VEQFRDAMND KATVWEEISG GQDIMRINNT
EIPSRAYVGR FNFRGGDQQK IIGTLSGGER NRVHLAKLLQ AGGNVLLLDE PTNDLDVETL
RALEEALLEF PGCAMVISHD RWFLDRIATH ILDYRDEGQV NFYEGNYTEY STWLKETLGT
DVIEPHRLKY KRMS
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