| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1179 |
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| Symbol | |
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| ID | 4922594 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 1366677 |
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| End bp | 1370291 |
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| Gene Length | 3615 bp |
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| Protein Length | 1204 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640162713 |
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| Product | type IV pilin biogenesis protein, putative |
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| Protein accession | YP_001093308 |
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| Protein GI | 127512111 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3419] Tfp pilus assembly protein, tip-associated adhesin PilY1 |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATATTT TGCGCGCTGG TCAGTCTGCT CTGGCAAATA TCATAATGCA GCGAAAGGGA
GAGCTTGTGA AAAGCTTTGT TGCTCTGTTG ACTGCCATCA TGAGTCTTCT CTCGGCTTCT
TCGTGGGCCG ACGATACCGA GTTATATGTC TATGAGGCGA GCGCCCGTAC TGGGGCTAGG
CCACAAATCC TGATCATCTT CGATAACTCT GGCAGTATGA GCACCAAAGT CTATGACGTG
GATAAACCTT ATACGCCGGG AGCTGGGGGC GGCTCGCGTT ACAATAACGG CAAGAAAGGG
ATGCTCTATT ACGTAAAAGG TGATCAGGGT AAGAATAAGT TGCCCGACCC CGATGACCCT
AATGAACGAC GTAAATTTTC AGGCACCATC AATAGCTGCG GTAGCTCCTG GGAGTTCCTG
AACGACTATG GCATCTTTAC CGGTTTCTTC CGTAAGTATA CCTTTAGCGG TGCCAACGGT
GCCTGGCGTG AGTTTGGCGA TAACAATGGT CTGAATGCTA AGGCGGTGGA TTGCTACGAA
GATATTCAGG AAGGCAATTA TCTTAATGCT AAGGGATTAA CCTCGGGGCT ACCTGTCGAT
AGTTTGGGAT CTCCCACCAC GCCTATCATG TATAACAATG TCAGCAGTAG TTCGAGTGAT
AGCATCAAGA AGACCGCCAA GGAGCAGGCG CAGCTTACCG GCTTTGGTAC CGGGCGGGTG
CTCACCGTGT ATACCGAGGA TTACCTTCGC TGGCATCACA ATGCAAACAA GAAACAAGAA
GATAAAACTC GCTTAGAGCT GGCCAAAGAT GCGATTAAAA ACGTCATCTT AACCACCCCG
GGAGTGGATT TCGGCCTGGC AATTTTCAAC ATGAATGGCC CAGATGACAC CCTATATAAT
GGCCGTAACG GTGGGCGCAT CATCAAAGCC ATTCAGACCC TGACGCCAGG GCAAAAAAAG
ACACTACTCA GTGGGGTTAA AGATATTGAG TATGGCTGGA ACACCCCCCT GTGTGAAACC
CTTTACGAGG CCTATCGTTA CTTCGCCGGT AAGTCTGTGG AGTTTGGCGA TGATGATAAG
GATTATACCT ATGAATCATG GGGCCGATGG GTAACTTATA GAGCCAATAA AAATGATAGT
TTGGACAAGG ATGCGCTTGT TAAGGGAACA AATACCTATC AATCCCCCTT TAAGAAGTGT
CAGAACAACG CCTATATCGT CTTCATAACA GATGGGGAAC CGACCCTAGA CAGCGCCGCC
GATGTGGAAG TCACGAAGTT AACCGGTGGC GTCGATAAGC ACAGCACTAG TTACATGAGC
GCGCTGTCGA GTTGGATGTA TCGCAAAGAT GTAAACCCTA ACATGGATGG CGATCAGCAT
GTGATCACCC ACACCATTGG CTTCAGTGAG GGGGCAAAAA ATGCCGAAGA TCTGTTGAAG
AAGGTGGCGA GCAAGGGGGG CGGAAGCTAT TTCGATGCCA CCGATGCGAC TAAGCTGCAG
GGCTCTATTC AACAGGCGGT GAATGAGGTG TTGGCCAACA GCGCAAGTTT TACTTCTCCC
TCTGTGGCCA GCAACAACTT TAACCGTACC CAGACTTTTA ACTATGCCTA TTACTCCATG
TTCCTGCCGG ACAGAGGTCC GCGCTGGACG GGGAATATCA AGAAGTTCAG AGTCGCCGCC
GATGGGACAG TTTTGGACGC AGAGGGTAAA ATAGCGTTGG GTGATGACGG TAACATCAAG
GATAGCGCCT GCTCCTACTG GACGCCCAAG AAGCTTTGTG GCGATGGCAA CGATGTGCGC
AAGGGGGGCG TCCTGTCGGC GATGCAGAGT GCCGATAGCC GAACCCTATA CAGTAATTTG
GGGGGCGGCA TGGATACGCT CAGCCTGTCG GCGGCGGCCA CCAAGGCAGG TGGTCAGGAA
GACCTGGCCA ATTTCATGGG TGTTGATAAG AGTCAGCTCA CTAACCTATT CGATTGGGCT
AAGGGGCTGG ATGTGGACAA CGACAAGAAC CAGACGACCA TTGCCGATCC CGCCAAGAAC
TGGCGCAATG ACATCATGGG TGATGCCCTT CACTCTAAGC CTCTGGCATT GAACTTTGGC
AGTAAGTCTA GCCCGGATAT ACGTATCCTG GTTGGTACCA ACCATGGCTT CATGCATATG
TTCAAGGATG ACACCACTGC CAACGAGGTT AGCGAGAGCT GGGCCTTCAT GCCTTATGAA
CTGCTGCCAA ATATCCAGAC CCTGAGAAAC AATGTGCCGA CGGGCGTGCA CTCAGTCTAT
GGTATCGACG GCTCTCCTGT TGCCTATGTG AAAAATGGCG CCTCAGGTGT AGAAAAAGCT
TGGCTCTTCT TCGGCATGCG TCGCGGTGGT GATAGTTACT ATGCCCTGGA TATCAGCAAC
CCTGATTCGC CAAGCTTCAA GTGGCGTATC GATGCCAGCT CGCCGGGCCT GAGTGAGCTT
GGACAATCCT GGTCGACACC TGTGGTGACC ACGATTCGCA GTGCCAGCGG CACGGAAAAA
CCTGTGCTCA TCTTCGGTGC TGGGTATTCA CCTGCGGGTA AAGATGGTAA AGACCTTGGC
ACTAAGGATA ACAAAGGGCG TGGCGTGTTT ATCGTCGATG CCGATACCGG CAAACTGATC
CATCAATTTG GCGCCGGTGG CGGCACGGCC CTGCCAGGGA TTCAGGACAG TATTCCTAGC
GGTGTGGCGG TACTCGATGC CAGTGGCGAT GGCAATACCG ACCGTATCTA TGCGGTCGAT
ACCGGTGGTA GTGTCTGGCG CATGGATATG CCAAGGGCGG ATAAGGCTAG CTGGTCAGCC
TTTAAGTTTG CCGATCTAGG TGGCAAGTCG CTGCTGCAGA ATCGTCGCTT CTACTCGGCC
CCAGTTGTGG CGCAGACCAT GATTAACAAT GTCTCAGTGG TTGATTATAC AGTCAATGGC
AAGACTACTA GGGTAACCAC GAGTCAGAAT GTACCTTACG ATGCCGTGGT GGTGGGCAGT
GGCCACAGGG CGGCGCCGTC CGATACCTCC CGCGAAGACA TGTTTTTCAC CCTACAAGAT
AGAAACGTGG TGACTCAGAC CTTCGGCGGC ACGGGCAGGC CTAAGGCGCC AGCGCCTTTG
ACTCTTAGCG ACCTCTACGA AACGACCAAG TTGAAGGCTA ATCAAGCGCC CGACAAGATT
GCTATTAGTA AGAAGCGCGG GTGGTATTTT AAACTTCCTG GGCTTGGTGA GAAGAATCTG
TCACCGGCGA CTATCATTAA CGGTCAGGTG TTCTTCACGA CCTTTGTGCC GGGTACAGCA
GCGAGTAACA ACCAGTGCTT AACGTCAGGC ATGGGCTTCC TCTATCCCTT TAATCTGCAC
TATGGCACGA GTAACTACAC GTCGGTCGCT CTAGAGGCGG GTAACTTGGT ATTAGACACT
CCTCAGCTTG TGATCCCTGC CGACAACAAG GGGGGGCAAG GAAAGGATGG TGATGCCTAC
ATGTATCTGA TCGGCATAGG TAACGCCGCC GAGAAGATGG AGAAGGTTAA ACCCGACGAC
GATTGCCCCG CCGGGGACAA TCGCTGCATA GGTGGCCGAC TGCGTGCTCA TAAGATCTAC
TACTATAGCG AGTAG
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| Protein sequence | MDILRAGQSA LANIIMQRKG ELVKSFVALL TAIMSLLSAS SWADDTELYV YEASARTGAR
PQILIIFDNS GSMSTKVYDV DKPYTPGAGG GSRYNNGKKG MLYYVKGDQG KNKLPDPDDP
NERRKFSGTI NSCGSSWEFL NDYGIFTGFF RKYTFSGANG AWREFGDNNG LNAKAVDCYE
DIQEGNYLNA KGLTSGLPVD SLGSPTTPIM YNNVSSSSSD SIKKTAKEQA QLTGFGTGRV
LTVYTEDYLR WHHNANKKQE DKTRLELAKD AIKNVILTTP GVDFGLAIFN MNGPDDTLYN
GRNGGRIIKA IQTLTPGQKK TLLSGVKDIE YGWNTPLCET LYEAYRYFAG KSVEFGDDDK
DYTYESWGRW VTYRANKNDS LDKDALVKGT NTYQSPFKKC QNNAYIVFIT DGEPTLDSAA
DVEVTKLTGG VDKHSTSYMS ALSSWMYRKD VNPNMDGDQH VITHTIGFSE GAKNAEDLLK
KVASKGGGSY FDATDATKLQ GSIQQAVNEV LANSASFTSP SVASNNFNRT QTFNYAYYSM
FLPDRGPRWT GNIKKFRVAA DGTVLDAEGK IALGDDGNIK DSACSYWTPK KLCGDGNDVR
KGGVLSAMQS ADSRTLYSNL GGGMDTLSLS AAATKAGGQE DLANFMGVDK SQLTNLFDWA
KGLDVDNDKN QTTIADPAKN WRNDIMGDAL HSKPLALNFG SKSSPDIRIL VGTNHGFMHM
FKDDTTANEV SESWAFMPYE LLPNIQTLRN NVPTGVHSVY GIDGSPVAYV KNGASGVEKA
WLFFGMRRGG DSYYALDISN PDSPSFKWRI DASSPGLSEL GQSWSTPVVT TIRSASGTEK
PVLIFGAGYS PAGKDGKDLG TKDNKGRGVF IVDADTGKLI HQFGAGGGTA LPGIQDSIPS
GVAVLDASGD GNTDRIYAVD TGGSVWRMDM PRADKASWSA FKFADLGGKS LLQNRRFYSA
PVVAQTMINN VSVVDYTVNG KTTRVTTSQN VPYDAVVVGS GHRAAPSDTS REDMFFTLQD
RNVVTQTFGG TGRPKAPAPL TLSDLYETTK LKANQAPDKI AISKKRGWYF KLPGLGEKNL
SPATIINGQV FFTTFVPGTA ASNNQCLTSG MGFLYPFNLH YGTSNYTSVA LEAGNLVLDT
PQLVIPADNK GGQGKDGDAY MYLIGIGNAA EKMEKVKPDD DCPAGDNRCI GGRLRAHKIY
YYSE
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