| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1169 |
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| Symbol | |
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| ID | 4921416 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 1348514 |
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| End bp | 1350715 |
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| Gene Length | 2202 bp |
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| Protein Length | 733 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640162703 |
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| Product | glycogen debranching enzyme GlgX |
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| Protein accession | YP_001093298 |
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| Protein GI | 127512101 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1523] Type II secretory pathway, pullulanase PulA and related glycosidases |
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| TIGRFAM ID | [TIGR02100] glycogen debranching enzyme GlgX |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.161033 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGACTGA CCCACGGCAA GCCTTATCCC TTGGGGGCAA CCTTAGATAG CGAGGGGGTG
AACTTCGCGC TGTTTTCCGC CCACGCCACT GCCGTCTACC TCTGTCTGTT TGACGAGGAG
GATAGGGAAG TGGCCAGGCT GCGTCTCGAG CGTCAGTCCC AGCAGATCTG GCATGGCCAT
GTGTCTGGGC TCAGGGCGGG TTGCCGCTAC GGCTACCGGG TCGATGGCCC CTATCAGCCC
TTGATTGGCC ACAGATTTAA TGTCAACAAG CTGCTGCTCG ACCCCTACGC CAGGCGCCTG
AGCGGCGCGA TTAAAGATCA TAAATCCCAC TACGGCTATC AGTTTGGTCA TGAGCAGGAA
GACTTAAGTT TTTGCGAGCT GGATAACGCC GAGCGGATGC CCAAATGTGT GGTGGTGGAT
CTCGAAAACC TTAAGCCCAT AACGCCCCTA GTGAATCCCT TCGATCAGAG TGACAGCCCG
CTGTCCCTGC GTCGCAGCGT GATCTACGAG CTGCATGTGA AGGGCTTTAG CCAGCAAAAT
CCCGAGGTGG CCAGTGAGCG TCGTGGCCGC TTCGCTGGCC TTGGCGACCC TGCTAGCCTG
CAGCACCTGA AAAGCCTCGG GGTCACAGCC GTCGAGCTTC TGCCTGTGCA GCAGTTTGTC
ACCGAGGCCT TCCTGCAGCA GAAGGGGCTG ACTAACTACT GGGGTTACAA CACCATAGGC
TATTTCGCGC CCCATCAGGC CTACCTAAGC GAGTCAATAA GCGAGTCTGA GGGCGATGGA
GCGATAGAGG AGTTTCGCGA CATGGTCAGC GCCCTGCACG GCGCCGGCAT AGAGGTGATC
CTGGATGTGG TCTACAACCA TAGCGCCGAG GGCAATCGTC TCGGGCCTAC CTATAGCTTT
AAGGGGATAG ACAACCTCAG CTACTACCGT CTCCACCCCA GCGAGCCGCG CTACTACATC
AATGACACAG GCTGCGGCAA TACCCTCAAC CTGTCCAATC CCAGGGTATT ACAGCTGGTG
ATGGACTCGC TGCGCTACTG GGTCGAGGTG ATGGGGGTCG ATGGCTTCAG GTTCGATCTG
GCCAGCACCC TGGGGCGGGA GGATCATGGC TTCGATGTGG GGTCTGGCTT CTTCGATGCC
ATCAGCCAGG ATCCTGTTCT CAGCCGGGTG CGTCTCATAG CCGAGCCCTG GGACATAGGC
CCTGGTGGCT ATCAGCTGGG GCAGTTTCCC ATAAGCTGGA GCGAGTGGAA CGACAGGTAT
CGCGATACGG TGCGCCGTTT CTGGCGCGGC GATGCCGGCA TGTTGCCCGA GTTCGCCACC
CGTTTTCATG GATCCAGCGA TCTGTTCGAA CACGCCGCGC GCAAGCCCGC CGCCAGCATC
AATTTTATCA CCAGCCATGA CGGCTTCACC CTGATGGATC TGGTGAGCTA TCGCCACAAG
CACAATCAGG CCAACGGCGA GCAGAATCGC GACGGCCACA ACGAGAACTA CAGCGACAAC
TATGGCCACG AGGGGCAGAG CGACGAGCTG GCGCTCACCG CACTGCGTGC TCGCCAGTGC
CGCAACATGC TCACCACACT GTTTATGTCT CAGGGTGTGC CCATGTTGCT GGCCGGCGAT
GAGGTGGGTC ATAGCCAGCT GGGCAACAAC AACGCCTATT GCCAGGACAA CCCCGCCAGC
TGGCTCGATT GGCGCAAGGA TATCGACAGT GATGAACTGC TGAGTTTCAC CGCTAACCTC
ATCAAGCTGC GTCGCCGTTT CCCCATGCTG TGCCACAGAG ACTATATCCA CGAGAGCGCC
AACCAGGCCT CCCCAGGACT CGACTGGTTC TGTCGACAGG GCGAGCCCAT GACAAAGGCC
CACTGGGGCG AGGCGCAGAC CCGCACCCTG AGCCTGGTGA TCAGTGGCGA GTTGGAGGCC
CAGGCCGGTT GCCGACAGGC GCTGCTGCTG ATGTTTAACG CCGACAACAG GCCCCAGCAG
TTCACCCTGC CGAGTCTCGA GGGGATAGTG CAGTGGCAGT GTCTGCTCAG TACCCAGGAC
AGCCCCCAGT ATGGCGAGTC CGCCAGCTAT CAGGCCCTGC TGCAGGGGGC CAGTCTGTTG
CTGCAGGACC GTAGCCTGAT GATCTATTAC GCCCAATTTA CCTCAGCGCA AGAAGAGCCC
TCAGCGAGAG AAATGCCCTC GGCAAAAGGA GAGTCTAGAT GA
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| Protein sequence | MRLTHGKPYP LGATLDSEGV NFALFSAHAT AVYLCLFDEE DREVARLRLE RQSQQIWHGH
VSGLRAGCRY GYRVDGPYQP LIGHRFNVNK LLLDPYARRL SGAIKDHKSH YGYQFGHEQE
DLSFCELDNA ERMPKCVVVD LENLKPITPL VNPFDQSDSP LSLRRSVIYE LHVKGFSQQN
PEVASERRGR FAGLGDPASL QHLKSLGVTA VELLPVQQFV TEAFLQQKGL TNYWGYNTIG
YFAPHQAYLS ESISESEGDG AIEEFRDMVS ALHGAGIEVI LDVVYNHSAE GNRLGPTYSF
KGIDNLSYYR LHPSEPRYYI NDTGCGNTLN LSNPRVLQLV MDSLRYWVEV MGVDGFRFDL
ASTLGREDHG FDVGSGFFDA ISQDPVLSRV RLIAEPWDIG PGGYQLGQFP ISWSEWNDRY
RDTVRRFWRG DAGMLPEFAT RFHGSSDLFE HAARKPAASI NFITSHDGFT LMDLVSYRHK
HNQANGEQNR DGHNENYSDN YGHEGQSDEL ALTALRARQC RNMLTTLFMS QGVPMLLAGD
EVGHSQLGNN NAYCQDNPAS WLDWRKDIDS DELLSFTANL IKLRRRFPML CHRDYIHESA
NQASPGLDWF CRQGEPMTKA HWGEAQTRTL SLVISGELEA QAGCRQALLL MFNADNRPQQ
FTLPSLEGIV QWQCLLSTQD SPQYGESASY QALLQGASLL LQDRSLMIYY AQFTSAQEEP
SAREMPSAKG ESR
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