| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1167 |
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| Symbol | |
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| ID | 4921040 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 1343941 |
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| End bp | 1346178 |
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| Gene Length | 2238 bp |
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| Protein Length | 745 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640162701 |
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| Product | 4-alpha-glucanotransferase |
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| Protein accession | YP_001093296 |
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| Protein GI | 127512099 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1640] 4-alpha-glucanotransferase |
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| TIGRFAM ID | [TIGR00217] 4-alpha-glucanotransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.0817385 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGCTTAG AAAAGTTACT CTATTTGCAG GGCGTCGGCG CCAGCTATAG CGATTACTCG
GGTCGCCTGG TGCACCATAG CCAGGCCGAG CGCTTAGGGC TTCTCGCTTG TCTGCTGGCT
AACTGCACTC AGCCCAAGTT TCATCTGGAT GATCTCAGCC CAGATGGTTT CGTCGCCGCC
AATGGTGAGG CGATTGAAGA ACGTAATTTC GACCTCGATG TCGCGCCCTG GCAACGCCCG
TTGGCGACCT TTCAATTTGC CTGTCTGACT GAGCCAAGCT TTATCTTATC GCTGCCAGCC
GAGATGCAGC CCGACCTTAG GGTGCGCATC CTCACCGAAG GCGGCACTCA GCTCGAGATG
AGTATACCTT TTGCGGCGCT GGAGCGGGTG GGCGACTATT ATTGTGAGCC CCACCTCTAT
TACCGCTACC GGGTATCCAT CGCGCCTTAC CTAACTCAGG GCCAATCCCT ACCCATGGGC
TATCACAAGC TGTCGGTGGG TTTCTGTAAA GGGACCCTTG ATGGCAAGAG TAAGCTCAAT
ACCGTGGCCA TAGACTGGCA AACCGAAGGC CATCACGGCA CCTGGCTACT GGCGCCGCCC
AAGGCTAAAC AGCTACGGGA GACGGATAAG CCCTGGGGGG TAAGTATTGC CCTCTATAGC
CTGCGCAGCG ACAGTCAGTG GGGCATAGGG GACTTTGGCG ATCTGGGGGC TTTGATCGCC
TGGCTCGGGG GCTATGGCTG CGACTTTATT CAGCTCAATC CGCTCCATGC CCTGGGGGAT
TCCTTCAATC TGGAAGAGGC CTATATCAGC CCCTACAGTC CGAGCGACAG ACGCAGGCTC
AATCCTCTCT ATATTCATAT CGAGTCTGTG CCCGAGGCCA ATGAGATAGC GCCGCTGCTG
CAAACTCTTG CCCTGGATCG CGAGCGCCTC AACCGTGATA ACTGGCTCGA TTACCCTAAG
CTCACCCAGC TCAAGTATCG CCTCTTTGTC GCCCTCTATC AGGTGTTTAG CCGTGATGTG
CTGGGTAGCG GTGGGCCGCG CGAGCAGGCC TTCATGCAGT TTGTCGCCCA GGAAGGGGAG
GCGCTGAGCA GTTTCTGCCA GCTGGAGGCA GACAAGGCCC AAGCTCAGGG AGAGCAAATG
GCCGCAGATC CGCAGTTGCA TAGTTACTTG CAGTTTGTTG CCCACGAGCA GCTGATCGCC
TGTCAGCATC AGGCGCTCGC GGCGGGCATG AGCATTGGCC TTATCGGCGA CATGGCCGTT
GGCGTTCGCG GCGATGGCGC CGAGGTGCAT CACAATCGAG ACGCCTATTG CCAGCAGGCC
AGCATAGGTG CGCCGCCGGA CGATTTTGCC CCCAAGGGGC AGAACTGGGG GCTGACGCCG
CCGGATCCTA TCGCCATGGC CCAGTCGGGC TTTAGCCATT TTATTGCGCT GGTTCGCAGC
AACATGCGCT ACTACGGCGC CCTCAGACTC GATCATGTGA TGGCGCTGCT GCGTCTCTGG
TGGTGGCCGA GTGAACCCCA GGAGGCTCCC GGGGCCTATG TGTACTACCC CATAGACACG
CTACTTGCGA TCGTGCGCCT TGAGAGCATG CGCAGCAACT GTGTGGTGAT CGGCGAAGAT
CTCGGCATAG TGCCGGACGA GGTGCGCGCC AAGCTGAGCG ATGGCGGCAT CTATGCCAAC
GAACTCTTCT ATTTCTGCAA GCAGGGCGAG GCCTTTAAGT CGCCACAAGA TCACAGGGCC
GACAGCCTGA TGATGCTGGC TAACCATGAC GTGCCCACAC TACTGGCCTG GTGGTCTCAG
AGTGACCTGC ATCTTAAGCG TCAGCTGGAA CTTCTCGAAA GTGACCAGGC GCTAGAGCAA
GCCCTAGAGC GACGCGACGG CGAGCGCCAG CAGCTGCTGG CCTGGCTCGA AGCCAACGGC
GAAACCGCCT CGCTGGAGGA AGATTATCTG CTCCTGCTCA GCGCCTGGGT GACGGTGGCG
GCACGTTCCC ACTCGCGCCT ATTTAGTGTG CAGCTGGCGG ATCTCTGCTG CGAGCGACAC
GGGGTCAACA TCCCCGGCAC CTGGCAGGAA TATGCCAACT GGCAGCGACG ACTGCCCTAT
AGCCTGACCA GTCTGAGACA GTCGCCCTCG ATAAAGCGCC TGCTACGCAG CATCGTCGAG
GGACGCAGCT CGGCCGAGGC CAGCGAGCAA TTTTGCCGGG CAGGCGAGCA TCTTCGTCAG
CCTGTTTTCA GCCGATGA
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| Protein sequence | MGLEKLLYLQ GVGASYSDYS GRLVHHSQAE RLGLLACLLA NCTQPKFHLD DLSPDGFVAA
NGEAIEERNF DLDVAPWQRP LATFQFACLT EPSFILSLPA EMQPDLRVRI LTEGGTQLEM
SIPFAALERV GDYYCEPHLY YRYRVSIAPY LTQGQSLPMG YHKLSVGFCK GTLDGKSKLN
TVAIDWQTEG HHGTWLLAPP KAKQLRETDK PWGVSIALYS LRSDSQWGIG DFGDLGALIA
WLGGYGCDFI QLNPLHALGD SFNLEEAYIS PYSPSDRRRL NPLYIHIESV PEANEIAPLL
QTLALDRERL NRDNWLDYPK LTQLKYRLFV ALYQVFSRDV LGSGGPREQA FMQFVAQEGE
ALSSFCQLEA DKAQAQGEQM AADPQLHSYL QFVAHEQLIA CQHQALAAGM SIGLIGDMAV
GVRGDGAEVH HNRDAYCQQA SIGAPPDDFA PKGQNWGLTP PDPIAMAQSG FSHFIALVRS
NMRYYGALRL DHVMALLRLW WWPSEPQEAP GAYVYYPIDT LLAIVRLESM RSNCVVIGED
LGIVPDEVRA KLSDGGIYAN ELFYFCKQGE AFKSPQDHRA DSLMMLANHD VPTLLAWWSQ
SDLHLKRQLE LLESDQALEQ ALERRDGERQ QLLAWLEANG ETASLEEDYL LLLSAWVTVA
ARSHSRLFSV QLADLCCERH GVNIPGTWQE YANWQRRLPY SLTSLRQSPS IKRLLRSIVE
GRSSAEASEQ FCRAGEHLRQ PVFSR
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