| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1164 |
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| Symbol | |
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| ID | 4922441 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 1337910 |
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| End bp | 1341032 |
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| Gene Length | 3123 bp |
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| Protein Length | 1040 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640162698 |
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| Product | hydrophobe/amphiphile efflux-1 (HAE1) family protein |
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| Protein accession | YP_001093293 |
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| Protein GI | 127512096 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0522045 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCAGTG AGTTTTTTAT TCATAGGCCG AAATTTGCCT TCGTGATCTC AACCGTGCTG
ACCCTGGTGG GCTTGATCTC TATCCCCATC TTGTCGGTGG CCGAGTTTCC CGAAATTGCG
CCGCCACAGG TGAGCGTTAG CACTAGCTAT TCCGGGGCCA GCGCCGACAT AGTCAAAGAC
ACCATAGCCC AGCCCATAGA GGCTGAGGTT AACGGCGTCG AAGGGATGCT CTACATGCAG
TCCAAGAGCG CCAACGACGG CAGCTACTCC CTCAACGTCA CCTTCGATGT GGGCACAGAC
GCCGACATGG CCCAGGTGAA GGTGCAAAAC CGGGTGCAGC AGGCGATGCC CAGACTGCCC
GAGGAGGTGA AACGCCAGGG GGTGAAGGTT GAGAAGCAGA GCCCCAACAT CCTCATGGTA
GTAAACCTGG TTTCCCCCAA CGAGACCTTC GATTCCCTGT TTATTACCAA CTATGCCGGC
CTAAACGTCA AAGACGCCCT GGCGCGGCAG AATGGGGTAT CTAAGGTGCA GGTGATCGGC
GCCCTGGATT ACGCCATCCG TATCTGGCTG GATCCCAATC AGATGGCCAG CTTTGGCGTG
ACCGCCAGCG ATGTGATCGC CGCCCTGAGA GAGCAGAATA TTCAGGTGGC CGCCGGTCGT
ATCGGCGCCG CGCCCGTGGA TCCCCAGCAG CAATTTCAAT ATACCCTGCA GACCAAGGGA
CGTCTGAAAG ACCCCGAGGA ATTTGGCCGG GTGATGATCC GTGCCAATCC CGATGGCTCT
AAGGTGATCG TCTCAGATGT CGCCCGGGTC GAGCTGGGCT CTCAGACCTA TGACGCCCAG
GGTAAGCTGA ACAACAAACC CTCAGCCATC ATCGCCATCT ATCAGGCGCC GGACGCCAAC
GCCCTGGAGG TCGCCAAGGC GATCAAGGCC GAGATGGATA CCCTCGCCAG CCGCTTTCCG
GACGACCTCG AGTACAAGGT GCTCTATGAC ACCACAGAAT TTGTCGAGAC CTCGATAACC
GAGGTGGTGC AGACCCTGTT TATTTCGGTC GCCCTGGTGG TGTTTGTGGT CTACATCTTC
CTGCAAGATG CGCGTTCGAC CCTAGTGCCG GGGATCGCCA TTCCCGTCTC CTTGATAGGT
ACCTTCGCTT TCCTGTTGGC CTTCGGCATG AGCATCAACA CAGTCTCTCT GTTCGCGCTT
ATCTTGGCTA TCGGTATCGT GGTGGATGAT GCCATTGTGG TGGTGGAAAA CGTCACCCGC
CTGATGGAAG ATGAGGGGCT GTCGCCCACA GAGGCGACCT CCAAGGCGAT GAAGGAGGTG
ACGGGCCCCG TTATCGCCAC CACCCTGGTG CTGCTGGCGG TGTTTGCCCC CACGGCGGTG
ATGCCTGGGA TCACGGGGCA GATGTATGCC CAATTCTCTG TGACTATCTG TATCTCAGTG
CTTATCTCCT CGGTCAACGC CCTGACCCTG AGTCCGGCCC TGTGCGCCTC CCTGTTAAAG
CCACCCAAGA AACATACCCA CGGCTTCCAC CACCTGTTTA ACACCTACTT CGAGCGCTTC
ACCGGCGGCT ATATGAAGCT GGTCTCCTCT CTGGTACGTA AGCTGGTGCT GGTTGGCGTG
GCCTATGCTT GCTTGATCGG CGTCACCGGC GGCATCGCCA AAGTGCTGCC ATCGGGTTTC
GTGCCCATGG AGGATAAGAA GGCCTTCATG GTGGATATTC AGCTGCCAGA TGGTGCCTCG
CTCAACCGCA CCGAAGAGGT GATGCGTAAT CTGGTCAAGC TGACGCAGGA AGAGCCTGGG
GTGGAGAATG TGATCCATGC CAGTGGCTTC AGTATCCTGA CCGGCTCGGT CTCCTCTAAC
GGCGGCCTGA TGATCGTGAC CCTGTCGACC TGGGAGGAGC GTGATTCGCC CGACATGGTG
GAGGCGGCGA TTGTCGCCAA GTTGCAGGCC AAGTATGCCG CCAATCCGTC GGTGAAGGCG
ATGGCCTTCT CGCTGCCACC TATCCCGGGA GTTGGGAGCG TCGGCGGTTT CGAGTTTGTG
CTGCAGGACA CCCAAGGGCG TTCGCCCCAG GAGCTGGCCT CTGTGATGCG GGCGCTTATC
ATGAAGGCCA ACGGACAGCC TGAGATCGCC ATGGCCTTTA GTAACTTCCG CGCCGATGTG
CCGCAGATGT ATGTGGATGT GGATAGAGAC AAGGCCAAGG CGTTGGGGAT CTCGTTAAAT
GAGATCTTCT CTACCATGCA GACCATGCTC GGCTCTATGT ATGTCAACGA TTTCAACCGC
TTCGGTAAGG TGTTCCGGGT GATACTCCAG GCCGAAGGCG AGTTTAGAAA TTCCGACAAG
GATATTGCCA GCTTCTATGT GCGCTCGGCA AGTGGCGAGA TGGTACCCCT GAGCACACTG
GTGAAGGTGA CGCCCATCCT GGGACCGGAC GTGATGAACG CCTACAACAT GTTCAGCTCG
ACCACCATCA ACGGCTTCCC GGCACCGGGC TTTAGCTCGG GTGATGCCAT CGCCGCCATG
GAAAGGGCGG CTCAGGAAAC GCTGCCTGCG GGCTACAAGT TTGAGTGGAC GGGGCAGACC
TACCAAGAGA TCAAGGCGGG TAACCTGGCA CCGTTGATCT TCGCCCTGGC GTTGGTGTTT
ACCTATCTGT TCCTGGTGGC CCAGTACGAG AGTTGGAGCA TTCCCTTCGC GGTCATGCTG
GCGGTGCCTA TTGCCATCCT GGGGGCCTTC CTCAACATCT TGTTGGTGGG GAGCGAGCTC
AACCTCTACG CCCAGATAGG CCTAGTGCTC TTGATCGGTC TGGCCTGTAA GAACGCCATC
CTGATCGTCG AGTTTGCCAA ACAGCTCAGG GAAGAGGGCA AGAGTATTCT GGACGCGGCA
GAAACCGCTG CTAGGTTGCG TTTTCGCGCC GTACTCATGA CCGCCTTCTC CTTCCTGCTG
GGGGTATTAC CCTTGGTGAT TGCCACTGGC GCCGGCGCAG GAAGTCGTCG CGCCCTGGGT
TATTCCGTCT TCGGAGGCAT GATGGCGGCG ACTCTGGTGG GCACCCTGTT AGTGCCTGTG
TTTTACGTCA TCATGCAGAA GCTGCGTGAG CGCATGAAGG GTGAAGGCGC GACGAGCCAA
TAG
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| Protein sequence | MISEFFIHRP KFAFVISTVL TLVGLISIPI LSVAEFPEIA PPQVSVSTSY SGASADIVKD
TIAQPIEAEV NGVEGMLYMQ SKSANDGSYS LNVTFDVGTD ADMAQVKVQN RVQQAMPRLP
EEVKRQGVKV EKQSPNILMV VNLVSPNETF DSLFITNYAG LNVKDALARQ NGVSKVQVIG
ALDYAIRIWL DPNQMASFGV TASDVIAALR EQNIQVAAGR IGAAPVDPQQ QFQYTLQTKG
RLKDPEEFGR VMIRANPDGS KVIVSDVARV ELGSQTYDAQ GKLNNKPSAI IAIYQAPDAN
ALEVAKAIKA EMDTLASRFP DDLEYKVLYD TTEFVETSIT EVVQTLFISV ALVVFVVYIF
LQDARSTLVP GIAIPVSLIG TFAFLLAFGM SINTVSLFAL ILAIGIVVDD AIVVVENVTR
LMEDEGLSPT EATSKAMKEV TGPVIATTLV LLAVFAPTAV MPGITGQMYA QFSVTICISV
LISSVNALTL SPALCASLLK PPKKHTHGFH HLFNTYFERF TGGYMKLVSS LVRKLVLVGV
AYACLIGVTG GIAKVLPSGF VPMEDKKAFM VDIQLPDGAS LNRTEEVMRN LVKLTQEEPG
VENVIHASGF SILTGSVSSN GGLMIVTLST WEERDSPDMV EAAIVAKLQA KYAANPSVKA
MAFSLPPIPG VGSVGGFEFV LQDTQGRSPQ ELASVMRALI MKANGQPEIA MAFSNFRADV
PQMYVDVDRD KAKALGISLN EIFSTMQTML GSMYVNDFNR FGKVFRVILQ AEGEFRNSDK
DIASFYVRSA SGEMVPLSTL VKVTPILGPD VMNAYNMFSS TTINGFPAPG FSSGDAIAAM
ERAAQETLPA GYKFEWTGQT YQEIKAGNLA PLIFALALVF TYLFLVAQYE SWSIPFAVML
AVPIAILGAF LNILLVGSEL NLYAQIGLVL LIGLACKNAI LIVEFAKQLR EEGKSILDAA
ETAARLRFRA VLMTAFSFLL GVLPLVIATG AGAGSRRALG YSVFGGMMAA TLVGTLLVPV
FYVIMQKLRE RMKGEGATSQ
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