| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1163 |
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| Symbol | |
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| ID | 4921860 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 1336740 |
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| End bp | 1337897 |
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| Gene Length | 1158 bp |
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| Protein Length | 385 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640162697 |
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| Product | RND family efflux transporter MFP subunit |
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| Protein accession | YP_001093292 |
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| Protein GI | 127512095 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.0154539 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTTGGTA GAAACGCTTC ACCTCTCGCT CGACTCACCC TGTTTAGCGC GGCGCTGCTG
CTTGCGGCTT GCGGCAAGGC GCCGGCCCCC GGGCCCGCCG TTATGCCCAG TGTGATAGTT
AATACCGCCC AGGTTAAGGA GATCCGCGCC AAGACGGAGA TCGTCGGTCG CACCCGGGCA
TCGGAAGATG TGGTGATCAA GTCACAGATC CAGGGGCAGC TGCTGAAGCG CACCTTTGTC
GAGGGGGATG ACATAGATGC CGGCGAGCTG CTGTTTGAGA TCGACCCCTC CACCTTCGAG
GCCGAGCTTG CGCAGCAACA GGCGGTGCTC AAGCAGGCCA TAGCCTCTCG CGATGTGGCG
GTGATGAACT GGGAGCGTGG CCGTCGCCTG CTACCCGATG GCATGATCAG CGCCCAGGAC
ATGGATGAGC TTACCAGTCG TAAGCTGACC ACGGCGGCGG GGGTGGTGCA GGCCGAAGCG
GCGGTGAAGG CCGCCGAGTT GCAGCTCAGC TATACCAAGG TTTACGCGCC TATCTCTGGC
CGTATCAGCG GCGCCAAGGT GAGCCAGGGG GATATCATCA CGCCTCAGTC TGAGCTGGCC
AGCCTGGTGC AGTTGCAGCC CATGTGGGTT AACTTCCAGG TTGCCGAGAA GACCATCATC
TCCGCCAAAC AGAACTTTTC CAAGGCCGCC AAACATGAGG TGAAGATCTC GGATATCGTG
ATCCGCCTGC GCCTGCCCAA CGGCACCATG TTCGACGAGA CTGGGTATAT CGACTTTATC
AGCAATAGGG TCGATGCCGC CACCGGCACC CTGGAACTCA GGGCCACCTT CAACAATGAG
AGTAAGCTGA TGCTGCCAGG GCTGTTTGTG ACTCTGGTTA TCGAGTCGCC TATTAGCGAG
CAGGCCATCT TAATTCCACA GGCGGCGGTG CAGGAAGATC AGCAGGGACG TTTCGTCATG
GTGCTGGATG GTGACAACAA GGTGCAGAAG CGGGTGGTCG AACTGGGTGA CAGATTCGGC
GTCGACTGGC GCGTGCTCAG TGGCCTCAAC GAGGGCGAAC GTATAGTGGT GGATGGTCTG
CAGAAGATCC GTCCGGGTAT CGAGGTGAAG GCCGTCGAGC AGCAGGCGGT GCCTTTCCAA
GAAGCTAACG ATGCCTAA
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| Protein sequence | MLGRNASPLA RLTLFSAALL LAACGKAPAP GPAVMPSVIV NTAQVKEIRA KTEIVGRTRA
SEDVVIKSQI QGQLLKRTFV EGDDIDAGEL LFEIDPSTFE AELAQQQAVL KQAIASRDVA
VMNWERGRRL LPDGMISAQD MDELTSRKLT TAAGVVQAEA AVKAAELQLS YTKVYAPISG
RISGAKVSQG DIITPQSELA SLVQLQPMWV NFQVAEKTII SAKQNFSKAA KHEVKISDIV
IRLRLPNGTM FDETGYIDFI SNRVDAATGT LELRATFNNE SKLMLPGLFV TLVIESPISE
QAILIPQAAV QEDQQGRFVM VLDGDNKVQK RVVELGDRFG VDWRVLSGLN EGERIVVDGL
QKIRPGIEVK AVEQQAVPFQ EANDA
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