| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1139 |
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| Symbol | |
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| ID | 4923087 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 1313320 |
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| End bp | 1314432 |
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| Gene Length | 1113 bp |
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| Protein Length | 370 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640162674 |
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| Product | twitching motility protein |
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| Protein accession | YP_001093269 |
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| Protein GI | 127512072 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG5008] Tfp pilus assembly protein, ATPase PilU |
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| TIGRFAM ID | [TIGR01420] pilus retraction protein PilT |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.0768436 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAAGTTC GTCCATTTTT AAAGGTGATG GTGGAGCGCA AGGCGTCGGA TCTCTTCATC
ACCGCCGGCT TTCCCCCCAG CGCTAAGGTT GATGGCGAGG TGCGCCCCTT AGCCGAGAAC
CCTTTTACCC CGGCCCAGTC GCTGGAGTTT GTCGAGGCCC TGATGACAGA GGCCCAGCGC
AAAGAGTTTC ATGAGACCCG CGAATGTAAC TTTGCCTATG GCGAGAAGGG CCTGGGACGT
TTTCGTGTCA GCGCCTTCTG GCAGCGCGAG TCACCAGGTT GCGTGATGCG TCGCATCGAG
ACCAAGATCC CGCTGGTGGA AGATCTTAAG CTGCCACCGA TCCTGAAAGA CCTAGTGATG
AGTAAGCGTG GCCTTATCAT CATGGTGGGT GGTACGGGTA CAGGTAAGTC GACCTCGCTG
GCGGCGCTTG TGGGTTACCG CAACTCCCAC GCCCGTGGTC ATATCCTCAC CATCGAAGAT
CCGGTGGAAT TTGTCCACGA CCATCGCAAG AGCATCATCA CCCAGCGTGA GGTGGGCATA
GATACCGACT CGTTCGATGC CGCGCTCAAG AGTTCACTGC GTCAGGCGCC GGATGTGATC
CTGATCGGTG AGATCCGTAC CCAGGAGACC ATGGAGTTTG CCCTGTCGTT CGCCGAAACC
GGTCACCTCT GTATGGCTAC CCTGCACGCC AACAACGCCA ACCAGGCGCT GGACCGCATC
ATGCACCTGG TGCCCGAGAG TAAGCACCAG CAGCTGCTGT TCGACTTGTC GCTGAACCTT
CGCGGCATCG TAGCGCAGCA ACTTGTGCCT AAGGCAGATG GCACGGGTCG CCGGGCGGCC
ATCGAGGTGC TGATCAACAC CCCAAGGGTT GCCAGCATTA TCCAGAAGAA CGAGCTGCAT
CTGCTTAAGG AAACCATGGC CAAATCCAAC GAGCAGGGGA TGCAGACCTT CGACCAAGCG
CTGCTCAAGC TCTATGTGGA AGGTGAGATC AGCTACTCGG ATGCGCTGCA CCACGCCGAC
TCGCCAAACG ATCTGCGTCT GATGATCAAG CTGCAAAGCT CAGAATCGGC AAGCTCAGGC
TTCATGGAAG GTGTGACGCT GGATCTCGAC TAG
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| Protein sequence | MEVRPFLKVM VERKASDLFI TAGFPPSAKV DGEVRPLAEN PFTPAQSLEF VEALMTEAQR
KEFHETRECN FAYGEKGLGR FRVSAFWQRE SPGCVMRRIE TKIPLVEDLK LPPILKDLVM
SKRGLIIMVG GTGTGKSTSL AALVGYRNSH ARGHILTIED PVEFVHDHRK SIITQREVGI
DTDSFDAALK SSLRQAPDVI LIGEIRTQET MEFALSFAET GHLCMATLHA NNANQALDRI
MHLVPESKHQ QLLFDLSLNL RGIVAQQLVP KADGTGRRAA IEVLINTPRV ASIIQKNELH
LLKETMAKSN EQGMQTFDQA LLKLYVEGEI SYSDALHHAD SPNDLRLMIK LQSSESASSG
FMEGVTLDLD
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