| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1137 |
|---|
| Symbol | |
|---|
| ID | 4923516 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | - |
|---|
| Start bp | 1311533 |
|---|
| End bp | 1312234 |
|---|
| Gene Length | 702 bp |
|---|
| Protein Length | 233 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 640162672 |
|---|
| Product | alanine racemase domain-containing protein |
|---|
| Protein accession | YP_001093267 |
|---|
| Protein GI | 127512070 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0325] Predicted enzyme with a TIM-barrel fold |
|---|
| TIGRFAM ID | [TIGR00044] pyridoxal phosphate enzyme, YggS family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.218353 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.343329 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACAACAA TAGCAGACAG ACTGGCCGAC GCCCACCAAA GAATCGCTCA AGCGGCGCAA
AATTCATCAC GTGACAGCAG GGAGATACAG CTGCTGGCGG TCAGTAAAAC CAAGCCGATA
GATCAGATAG TAGCGGCATA TGATGCCGGG CAGCGGCTTT TTGGTGAAAA CTATGTTCAG
GAAGGTGAAG AGAAGATAAA TGCCCTGCGC GAAAGCCATG GCGACATCGA ATGGCACTTC
ATCGGCCCGC TACAGTCGAA CAAGACCAAG AGCATCGCCG AGCACTTCGA CTGGATGCAC
ACACTCAGCC GAGAGAAGAT CGCCAAACGC CTGAGCGAGC AGCGCCCCAG CCATCTTGCG
CCGTTGCAGG TCTGCATCCA GGTGAATGTC AGCCAGGAGC AGAGCAAGTC GGGCGTTAAT
CCAGATGAGG TCGCTCACCT GGCCGAAATC ATCGCCTCCC TGCCCAGGCT GACCCTGAGA
GGGCTTATGG CCATTCCCAC CGCCACAGAC GATGTTGCGC TGCAGCAGGC CGAGTTTAGC
CAGATGCAGG CCCTGTTCGA GGCGCTGAAA CAGCAACACC CGAGCCTGGA TACCCTCTCC
ATGGGGATGA GCCAAGATCT TGAGCAGGCG ATCGCCGCAG GCTCGACCAT GGTGCGGATC
GGCAGCGCCA TCTTCGGCGC CCGGGACTAT GCCAAAGCCT AG
|
|---|
| Protein sequence | MTTIADRLAD AHQRIAQAAQ NSSRDSREIQ LLAVSKTKPI DQIVAAYDAG QRLFGENYVQ
EGEEKINALR ESHGDIEWHF IGPLQSNKTK SIAEHFDWMH TLSREKIAKR LSEQRPSHLA
PLQVCIQVNV SQEQSKSGVN PDEVAHLAEI IASLPRLTLR GLMAIPTATD DVALQQAEFS
QMQALFEALK QQHPSLDTLS MGMSQDLEQA IAAGSTMVRI GSAIFGARDY AKA
|
|---|
| |