Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_1130 |
Symbol | |
ID | 4924116 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | - |
Start bp | 1305355 |
End bp | 1307196 |
Gene Length | 1842 bp |
Protein Length | 613 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 640162665 |
Product | hypothetical protein |
Protein accession | YP_001093260 |
Protein GI | 127512063 |
COG category | [S] Function unknown |
COG ID | [COG4805] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.0221143 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCAATAA AAACAAAAAC AACTATGCTC GCCATCTCAC TGGCGACACT CCTTTCTGGC GCAGTGCACG CCGCGCCAGT TTCACTCCCT CTACTTAGCG CCAGCGAACC GGTACAGAAG ATCAGCGCCC AGGAATCGGA GAAGGCCAAT CAACTGTTCG AAACCATCTT CATGGAAAAT GTGATGGCCA GCCCCATCAG CCAGACCCAT CTTGGGATCA AGACAGACTA TGGCAAGTGG GATGAGCGAG GGGAAGCTGC CGACAAGAAG AGCCTTGCAA GAGATAAGCA GCATCTGGCC CAGCTTAAGC AGATAGACAA AAGCAAGTTA GATGCCCAGA CCCTGCTTAG CTACGACCTG CTGACTCAGA AACTCGAGCA GAGCATCAGC GACTACAAGT GGCGCCTGTA TACCTACCCG GTAAACCAGA TGTACGGCGG CCACTCCATG GTGGCATCAT TCCTGATCAA CCAACATCAG ATAGACAGCG TCTCGGACGC CGAGGCCTAT ATCAGCCGCC TCAAGGGTGT GCCCCACTAC ATGCAGCAGT TGGAAGAAGC CCTAGAAGAG CGCGCCAAGG CGGGCATCAT AGCGCCTAAG TTTGTGTTTG CCTATGTACT GTCAGACAGC CGCAACATCA TCAGCGGCGC CCCCTTCGAT CAAACTGATG ACAGTGCCAT CTGGGCCGAT TTTCAGCGCA AGGTGGCTAA GCTAGCGATA GACGATGCCC AGCGCAATAA GCTACTCGAT GAGGCCAAAC AGGCGCTGAC CGCTCAGGTT AAGCCTGCCT ATGACAAGCT TATCGCCTAT GTCGAAACCC TGGAAAAGCG CGCCGATACC AAAGATGGTG TATGGAAGTT TAGAGACGGC GAGGCCTTCT ACAACAACGC CCTGGCACGC ACTACGACCA CCCACATGAC AGCCGATGAG ATCCACCAGC TGGGGCTCGC CGAGGTGGAC CGCATCCATC AGGAGATGCG CGCCATCATG AAGAAGGTCG GCTTCGAGGG CGATCTTAAG GCCTTCTTCA AGTTTATGCG TGAAGATAAG CAGTTCTACT ATCCCGACAC AGAGGAAGGC CGCACCGCCT ATCTAGACGA TGCCAAGGCA TTGATAGATA ACATCTCCTC TCGTCTGGAC GAGGTGTTTT TTGTTAAGCC TAAGGCGCCC ATGATAGTCA AACGGGTCGA GGCGTTCAGA GAAAAATCGG CCGGTAAGGC CTTCTATAAT CAGCCCACAC CTGATGGCAG CCGCCCAGGC ACCTACTACG CCAACCTGTA TGACATGGAG GCCATGCCCA AGTATCAGAT GGAAGCGCTG GCCTACCACG AGGGTACTCC TGGCCATCAT ATGCAGATCG CCATCGCCCA GGAGCTGCAA GGGATCCCTA AATTCAGAAA GTTTGGCGGC TACACCGCCT ACATAGAGGG CTGGGGGCTG TACAGCGAGT TCTTCCCTAA GGAGATGGGC CTGTATAAAG ACCCCTACTC AGATTTTGGC CGCCTAGCCA TGGAGCTATG GCGCTCATGC CGCTTGGTGG TGGATACCGG CATCCACGCC AAGCGTTGGA CCCGCGAGCA AGGGATCCAA TACTATGTCA ACAACACCCC TAATGCCGAG TCAGACGCCA TCAAGATGGT GGAGCGTCAT ATCGTGATGC CATCACAGGC AACCGCCTAC AAGATAGGCA TGCTCAAGAT TGTCGATATT CGCGAGAAGG CCAAGGCGAT CATGGGCGAT AAGTTCGATA TTCGCGAGTT CCACACTCTG GTACTCAAGA ACGGACCGCT GCCGCTGGAT GTACTGGAAG CTAAGGTGAT GAACTGGGCT CATAAGGCCT AA
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Protein sequence | MPIKTKTTML AISLATLLSG AVHAAPVSLP LLSASEPVQK ISAQESEKAN QLFETIFMEN VMASPISQTH LGIKTDYGKW DERGEAADKK SLARDKQHLA QLKQIDKSKL DAQTLLSYDL LTQKLEQSIS DYKWRLYTYP VNQMYGGHSM VASFLINQHQ IDSVSDAEAY ISRLKGVPHY MQQLEEALEE RAKAGIIAPK FVFAYVLSDS RNIISGAPFD QTDDSAIWAD FQRKVAKLAI DDAQRNKLLD EAKQALTAQV KPAYDKLIAY VETLEKRADT KDGVWKFRDG EAFYNNALAR TTTTHMTADE IHQLGLAEVD RIHQEMRAIM KKVGFEGDLK AFFKFMREDK QFYYPDTEEG RTAYLDDAKA LIDNISSRLD EVFFVKPKAP MIVKRVEAFR EKSAGKAFYN QPTPDGSRPG TYYANLYDME AMPKYQMEAL AYHEGTPGHH MQIAIAQELQ GIPKFRKFGG YTAYIEGWGL YSEFFPKEMG LYKDPYSDFG RLAMELWRSC RLVVDTGIHA KRWTREQGIQ YYVNNTPNAE SDAIKMVERH IVMPSQATAY KIGMLKIVDI REKAKAIMGD KFDIREFHTL VLKNGPLPLD VLEAKVMNWA HKA
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